PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIV99926

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 526aa MW: 60614.8 Da PI: 6.9797

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIV99926	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.2e-06	85	105	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C +f+ G+C GdrC+F H OIV99926 85 VPCYYFFN-GFCIKGDRCSFLH 105 68****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MDEDLIKRNT DCVYFLASPL TCKKGVECEY RHNEVARLNP RDCWYWLSGT CFNPTCAFRH 60 PPLDGHTGTP SEPTQSPLPT NKTAVPCYYF FNGFCIKGDR CSFLHTPDDS FYTVKPMKND 120 NGSTDALILE NKTSSANKTG EASTPTESHS DPALTALSRF KVQHKEDLLR LSLPKNVKPQ 180 DDCLGISSFE YKEATVTRPD SLSRGEGFVH SISHFCSEQS SDEQVNCQRE PEERWESSPG 240 FDVLVHDGLE NLGYEDDSEY LPVLDREHQE LDEQYLGYEF KSPDECDTIC PGADILYGQE 300 MYDGYRCLDR DLIHVDGRKV CAYSREIFLD SILSRKRIRM LPDRANCGRD LDLRDHLRRR 360 KEINVPPATG FLRRYESSFV VRSQERQQGY GIDQRPSRRL TSQLGFRTVE SIGEVETLLA 420 VNRRRLFKHS KQQHRPREHY REKLAKQHFL SSRKPVLKQR NSIHESTTFS GPKTLAEIKE 480 EKKKKTEESL HCRSTSADFK DPKPLSEILK DKRSIDQVRD GNTYNN

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MDEDLIKRNT DCVYFLASPL TCKKGVECEY RHNEVARLNP RDCWYWLSGT CFNPTCAFRH  60
PPLDGHTGTP SEPTQSPLPT NKTAVPCYYF FNGFCIKGDR CSFLHTPDDS FYTVKPMKND  120
NGSTDALILE NKTSSANKTG EASTPTESHS DPALTALSRF KVQHKEDLLR LSLPKNVKPQ  180
DDCLGISSFE YKEATVTRPD SLSRGEGFVH SISHFCSEQS SDEQVNCQRE PEERWESSPG  240
FDVLVHDGLE NLGYEDDSEY LPVLDREHQE LDEQYLGYEF KSPDECDTIC PGADILYGQE  300
MYDGYRCLDR DLIHVDGRKV CAYSREIFLD SILSRKRIRM LPDRANCGRD LDLRDHLRRR  360
KEINVPPATG FLRRYESSFV VRSQERQQGY GIDQRPSRRL TSQLGFRTVE SIGEVETLLA  420
VNRRRLFKHS KQQHRPREHY REKLAKQHFL SSRKPVLKQR NSIHESTTFS GPKTLAEIKE  480
EKKKKTEESL HCRSTSADFK DPKPLSEILK DKRSIDQVRD GNTYNN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	482	512	KKKKTEESLHCRSTSADFKDPKPLSEILKDK

Link Out ? help Back to Top
Ensembl	OIV99926