PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIV99334

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 930aa MW: 101364 Da PI: 5.7255

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIV99334	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.3	5.4e-08	66	91	1	25
--S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaH 25 +kt+lC+ff+r C++Gd C++aH OIV99334 66 WKTSLCSFFRRQDkDCSHGDACRYAH 91 8********669********** PP

Sequence ? help Back to Top
Protein Sequence Length: 930 aa Download sequence
MAEPLLNTDL SSSKTLNPIN VQDSTSEVHP TAPNETQVTE ENDAVVVTGE KRKRDDGDDR 60 SLHPMWKTSL CSFFRRQDKD CSHGDACRYA HTEEELRPRP DNTWDPTSER AKKALKTKAE 120 EKNSVSEDVM VTEALVDDDD DGDSNNALSK CLGITFKLAK KKKGMALGFV TFEDEEQMKS 180 ASKDLDGKLV GGGGKRIKVA DVIPRSFEKK SNMENTLLDA ETNGDNSKTR NVRDVVTPLA 240 HLDYAEQMEQ KKTSLMQMLK KLTRNARKAC PNGVPLPEWI LKSREIGGLP CELEGIIASP 300 LVNGYRNKCE FSVGYSLEGK VTVGFMLGNF REGVTAVEEA VDCPNVSAIA CKYATIFQEF 360 LQHSDLPVWN RFKNNGFWRQ LTVREGRTNR NAVDAETFDG IAEAMLIVQV STSGVDDAQV 420 AAEFKKLAEA FVAGATSHSP KLPLTALVVQ DHQGISNVAP ADAPLHSLPI SKAVSAPDIE 480 GKNAMDVRIH DYISNLRFSI SPTAFFQVNT LAAEKLYSLA GDWAQLGPDT LLFDICCGTG 540 TIGLTLAHRV GMVIGIEMNA SAVSDAHRNA EINGIKNCRF ICSKAEDVMG SLLTEYLNVA 600 KKEVDDPNIA GSNIDVSEGS SCQEPENGER VSPPTHSSEN NNADNDVSEA FASEVPENGE 660 KATHCSENDT AEIGSGLQKD SSVENGNSSS QQFKNVVAIV DPPRAGLHPT VIKALRTHPG 720 LRRLVYISCN PESLVANAIE LCTPSPEKFE KGNKGNRGWR NMSSAGLARH RSKSMPISEA 780 FKPVKAMAVD LFPHTPHCEL VMLLERITIE CVVGSTSLGA PTLPIIHDWW VFGMVSGYVP 840 PIRTEGVLAP LPIGFAVFMV HLATIPVTGT GINPARSFGS AVIYNKEKIW DDHWIFWVGP 900 LIGAFVAAVY HQYILRAAAI KALGSFRSNN

Sequence ? help Back to Top

Protein Sequence Length: 930 aa Download sequence

MAEPLLNTDL SSSKTLNPIN VQDSTSEVHP TAPNETQVTE ENDAVVVTGE KRKRDDGDDR  60
SLHPMWKTSL CSFFRRQDKD CSHGDACRYA HTEEELRPRP DNTWDPTSER AKKALKTKAE  120
EKNSVSEDVM VTEALVDDDD DGDSNNALSK CLGITFKLAK KKKGMALGFV TFEDEEQMKS  180
ASKDLDGKLV GGGGKRIKVA DVIPRSFEKK SNMENTLLDA ETNGDNSKTR NVRDVVTPLA  240
HLDYAEQMEQ KKTSLMQMLK KLTRNARKAC PNGVPLPEWI LKSREIGGLP CELEGIIASP  300
LVNGYRNKCE FSVGYSLEGK VTVGFMLGNF REGVTAVEEA VDCPNVSAIA CKYATIFQEF  360
LQHSDLPVWN RFKNNGFWRQ LTVREGRTNR NAVDAETFDG IAEAMLIVQV STSGVDDAQV  420
AAEFKKLAEA FVAGATSHSP KLPLTALVVQ DHQGISNVAP ADAPLHSLPI SKAVSAPDIE  480
GKNAMDVRIH DYISNLRFSI SPTAFFQVNT LAAEKLYSLA GDWAQLGPDT LLFDICCGTG  540
TIGLTLAHRV GMVIGIEMNA SAVSDAHRNA EINGIKNCRF ICSKAEDVMG SLLTEYLNVA  600
KKEVDDPNIA GSNIDVSEGS SCQEPENGER VSPPTHSSEN NNADNDVSEA FASEVPENGE  660
KATHCSENDT AEIGSGLQKD SSVENGNSSS QQFKNVVAIV DPPRAGLHPT VIKALRTHPG  720
LRRLVYISCN PESLVANAIE LCTPSPEKFE KGNKGNRGWR NMSSAGLARH RSKSMPISEA  780
FKPVKAMAVD LFPHTPHCEL VMLLERITIE CVVGSTSLGA PTLPIIHDWW VFGMVSGYVP  840
PIRTEGVLAP LPIGFAVFMV HLATIPVTGT GINPARSFGS AVIYNKEKIW DDHWIFWVGP  900
LIGAFVAAVY HQYILRAAAI KALGSFRSNN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OIV99334