PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIV97297 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Family | LSD | ||||||||
Protein Properties | Length: 176aa MW: 18676.5 Da PI: 8.6107 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 49.2 | 8.3e-16 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L YPrGA++VRCalC+t+ OIV97297 7 CNGCRNILLYPRGATNVRCALCNTI 31 ***********************97 PP | |||||||
2 | zf-LSD1 | 44 | 3.5e-14 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y GA+sVRC++C+tV OIV97297 46 CGGCRTLLMYAHGATSVRCSCCHTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 48.8 | 1.1e-15 | 84 | 107 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP+GApsV+CalC+ OIV97297 84 CGNCRTTLMYPYGAPSVKCALCHY 107 **********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence |
MQSQVVCNGC RNILLYPRGA TNVRCALCNT ITSVPPPGME MSQLYCGGCR TLLMYAHGAT 60 SVRCSCCHTV NLVPASNQVS HIHCGNCRTT LMYPYGAPSV KCALCHYITN VTTTNGRLPN 120 PGQRTNGPTN PGTVSSTPTS MPHSQSQTVV VENPMSVDSS GKLVSNVVVG VTTEKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 2e-71 | LSD family protein |
Link Out ? help Back to Top | |
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Ensembl | OIV97297 |