PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIV96975

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 848aa MW: 94119.1 Da PI: 8.4483

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIV96975	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.3	4.8e-07	138	160	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t +Cr fa+ G C++G+ C+F H OIV96975 138 TQPCREFAA-GKCRRGSLCHFLHH 160 679****.***********6 PP
2	zf-CCCH	17.7	6.2e-06	239	258	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ffa G C+ G +C+F+H+ OIV96975 239 CKFFAN-GNCRNGKSCRFSHD 258 998888.*************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 848 aa Download sequence
MSGNARNRSS KWDMRDNPEF APDNKQSRSY FEGNDKLKSG MGFSSKEPFY RGRISNKDDI 60 MNKDYSDLDE TMEWDADETY NKKFSPGFEE RKYKRHSQSP KNRRSMSGRS SRSRSPPHGF 120 RRDSGFNDRN KTRAGGLTQP CREFAAGKCR RGSLCHFLHH DNQNHEDSWE SKHREDGAPK 180 YSASHDSRDH SHRSGRSNDG YSKGSMDEST RERENDRRRR DYSFDQGGGH GPNRSGLTCK 240 FFANGNCRNG KSCRFSHDKQ TYGSPNRRSR DDTWESNPGG DHQTLDRPKL TDSVSPTRRR 300 RDDRWGSDGN MVENDNSKQN DAVTVSDTEK LVEDTCGNIG AIDPGFTAWP TKDGWGHGLD 360 NNRVHGEPTF SSNKKENDHQ VAENAGSDMH VSQPTGPSNW SGNEMPLDWN YRMGSSSRIQ 420 EEHEQNKHGI TQDGTYLATE HEGTQVPGKG FNQNAQNINP LHSSSGHGVR QSQVTVPILP 480 SRGVVTDVLP VQDFNQNVQN INPFHPSSGH AVGQSQVAVS GLPSRGVVES MHTQQVSTDV 540 LPGQGFNQNE QNINPLHSSS GHAVGQSRAD LPILPSRGIV ERIHGQEVSA EKKYTVEPNI 600 TDAGNSQVSS GKPQTQNMVS NEQLAQLSNL SASLAHILGS GQQLPQLYAA LNSHDAKGSP 660 SLAKTEVLAM PVSNTFIKPE PVIGITKEYD PMSDSIETKN VVASGATKAF SLSKKNAEDK 720 EKNEVVVVEK QSSPSGHKNT KENGPSENMD QNGEPDDTKK TKDAKGIRAF KFALVEFVKE 780 LLKPAWKEGQ INKEDYKAIV KKVVDKVTGT MQGANVPQTQ EKIDHYLSFS KSKLSKLVQA 840 YVEKVQKA

Sequence ? help Back to Top

Protein Sequence Length: 848 aa Download sequence

MSGNARNRSS KWDMRDNPEF APDNKQSRSY FEGNDKLKSG MGFSSKEPFY RGRISNKDDI  60
MNKDYSDLDE TMEWDADETY NKKFSPGFEE RKYKRHSQSP KNRRSMSGRS SRSRSPPHGF  120
RRDSGFNDRN KTRAGGLTQP CREFAAGKCR RGSLCHFLHH DNQNHEDSWE SKHREDGAPK  180
YSASHDSRDH SHRSGRSNDG YSKGSMDEST RERENDRRRR DYSFDQGGGH GPNRSGLTCK  240
FFANGNCRNG KSCRFSHDKQ TYGSPNRRSR DDTWESNPGG DHQTLDRPKL TDSVSPTRRR  300
RDDRWGSDGN MVENDNSKQN DAVTVSDTEK LVEDTCGNIG AIDPGFTAWP TKDGWGHGLD  360
NNRVHGEPTF SSNKKENDHQ VAENAGSDMH VSQPTGPSNW SGNEMPLDWN YRMGSSSRIQ  420
EEHEQNKHGI TQDGTYLATE HEGTQVPGKG FNQNAQNINP LHSSSGHGVR QSQVTVPILP  480
SRGVVTDVLP VQDFNQNVQN INPFHPSSGH AVGQSQVAVS GLPSRGVVES MHTQQVSTDV  540
LPGQGFNQNE QNINPLHSSS GHAVGQSRAD LPILPSRGIV ERIHGQEVSA EKKYTVEPNI  600
TDAGNSQVSS GKPQTQNMVS NEQLAQLSNL SASLAHILGS GQQLPQLYAA LNSHDAKGSP  660
SLAKTEVLAM PVSNTFIKPE PVIGITKEYD PMSDSIETKN VVASGATKAF SLSKKNAEDK  720
EKNEVVVVEK QSSPSGHKNT KENGPSENMD QNGEPDDTKK TKDAKGIRAF KFALVEFVKE  780
LLKPAWKEGQ INKEDYKAIV KKVVDKVTGT MQGANVPQTQ EKIDHYLSFS KSKLSKLVQA  840
YVEKVQKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	220	RERENDRRRR
2	216	221	DRRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	3e-13	C3H family protein

Link Out ? help Back to Top
Ensembl	OIV96975