PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIV95782 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Family | C3H | ||||||||
Protein Properties | Length: 189aa MW: 19823.7 Da PI: 6.9165 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.6 | 3.3e-11 | 59 | 81 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C ++a+ G Ck+G+ CkF H+ OIV95782 59 PPCTHYAQRGVCKFGPACKFDHP 81 89********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence |
MIIEEVKKTA ELIKLKLSLD SKLEKLGLSL NWILHIIICS TAFLIVKHLM FVFDIQGAPP 60 CTHYAQRGVC KFGPACKFDH PIASLSYSPS ASSLADMPVA LYPVASSIGT LALSSSSLEL 120 RPDLPPGSNN EADSVRVSSS ISTLTGSVGF TLSTGEPVSQ PNTQPSSQSS NPIAATTTTT 180 SGNVSPTSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 4e-10 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OIV95782 |