PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIV95781

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 363aa MW: 38769.6 Da PI: 7.8696

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIV95781	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.3	4e-11	52	77	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++rtG C yG+ C+F+H+ OIV95781 52 PGEADCMYYLRTGVCGYGSHCRFNHP 77 57899********************8 PP
2	zf-CCCH	37.2	5.1e-12	98	122	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G +Ck++H++ OIV95781 98 QPVCQYYMRTGSCKFGTSCKYHHPK 122 689********************96 PP
3	zf-CCCH	36.3	9.5e-12	143	168	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G++CkF+H++ OIV95781 143 GEKECSYYVKTGQCKFGSTCKFHHPQ 168 7899********************97 PP
4	zf-CCCH	37.5	3.9e-12	310	335	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++rtG+Ck+G++C+++H+p OIV95781 310 DQPECQHYLRTGECKFGSSCRYHHPP 335 689*********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MESFARSTEG SGSDPSLEWT GHGGETGLEG SMWQLGLGGG GGGREESYPL RPGEADCMYY 60 LRTGVCGYGS HCRFNHPSDR GAVIGAAKTG EFPERVGQPV CQYYMRTGSC KFGTSCKYHH 120 PKEGGGTANP VSLNYYGYPL RPGEKECSYY VKTGQCKFGS TCKFHHPQPA DVHIAPPPLP 180 VPQVSHLSVP VPSPLYPTVQ PPSDHISQQL SVLVARPPLL PGSYVQSPYG PMVLSPAMVP 240 YSGWAPYQAT ATSPVLPSST PSNVGSAQLY GITQLASPAG AYPGPYQPSG SKIGPSSNSQ 300 KEHSLPERPD QPECQHYLRT GECKFGSSCR YHHPPDMNAP KTTMTLSPAG LPSRPVMIAS 360 QLL

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MESFARSTEG SGSDPSLEWT GHGGETGLEG SMWQLGLGGG GGGREESYPL RPGEADCMYY  60
LRTGVCGYGS HCRFNHPSDR GAVIGAAKTG EFPERVGQPV CQYYMRTGSC KFGTSCKYHH  120
PKEGGGTANP VSLNYYGYPL RPGEKECSYY VKTGQCKFGS TCKFHHPQPA DVHIAPPPLP  180
VPQVSHLSVP VPSPLYPTVQ PPSDHISQQL SVLVARPPLL PGSYVQSPYG PMVLSPAMVP  240
YSGWAPYQAT ATSPVLPSST PSNVGSAQLY GITQLASPAG AYPGPYQPSG SKIGPSSNSQ  300
KEHSLPERPD QPECQHYLRT GECKFGSSCR YHHPPDMNAP KTTMTLSPAG LPSRPVMIAS  360
QLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06410.1	1e-128	C3H family protein

Link Out ? help Back to Top
Ensembl	OIV95781