PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIV95406
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
Family C3H
Protein Properties Length: 349aa    MW: 37625.4 Da    PI: 8.7284
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIV95406genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13.2e-085275427
              ---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
              ++C +++rtG+C yG+ C+++H++
  OIV95406 52 PNCVYYMRTGFCGYGGGCRYNHPR 75
              78********************96 PP

2zf-CCCH406.4e-1396120327
               S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
               +++C+++++tG Ck+G++CkF+H++
  OIV95406  96 EPPCQYYLKTGACKFGASCKFHHPK 120
               79*********************96 PP

3zf-CCCH35.71.4e-11141166227
               -S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
               ++++C++++++G+Ck+G +CkF+H++
  OIV95406 141 GEKECSYYLKMGQCKFGITCKFHHPQ 166
               7899********************97 PP

4zf-CCCH37.83.2e-12297323127
               --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
               +++++C++f+rtG Ck+G  C+F+H++
  OIV95406 297 PGEPECQYFLRTGDCKFGLACRFHHPR 323
               5799*********************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    
MDSYGRNPIR NGSNPTNQTE WHSSGTNTGL EESMWQLTLS SSESYPERTG APNCVYYMRT  60
GFCGYGGGCR YNHPRDRAAV AAAVRATGEY PERVGEPPCQ YYLKTGACKF GASCKFHHPK  120
HGGGSLSQAP LNIYGYPLRP GEKECSYYLK MGQCKFGITC KFHHPQPAGT SLPASAPQFY  180
QQVQSPTVPL PDQYGGASTS LRVARPPILP GSYVQGAYGP LLLSPGVVPF PGWNPYSASV  240
SPALSPGAQP AVGATSLYGV TQLNSSTSAF ARPYTPLPSS SGPSGSNQKE QVFPERPGEP  300
ECQYFLRTGD CKFGLACRFH HPRDQVVAQP LLNPIGLPLR PVSMVTHLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.11e-161C3H family protein