PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIV95406 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Family | C3H | ||||||||
Protein Properties | Length: 349aa MW: 37625.4 Da PI: 8.7284 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.1 | 3.2e-08 | 52 | 75 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +++rtG+C yG+ C+++H++ OIV95406 52 PNCVYYMRTGFCGYGGGCRYNHPR 75 78********************96 PP | |||||||
2 | zf-CCCH | 40 | 6.4e-13 | 96 | 120 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG Ck+G++CkF+H++ OIV95406 96 EPPCQYYLKTGACKFGASCKFHHPK 120 79*********************96 PP | |||||||
3 | zf-CCCH | 35.7 | 1.4e-11 | 141 | 166 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++++G+Ck+G +CkF+H++ OIV95406 141 GEKECSYYLKMGQCKFGITCKFHHPQ 166 7899********************97 PP | |||||||
4 | zf-CCCH | 37.8 | 3.2e-12 | 297 | 323 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f+rtG Ck+G C+F+H++ OIV95406 297 PGEPECQYFLRTGDCKFGLACRFHHPR 323 5799*********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence |
MDSYGRNPIR NGSNPTNQTE WHSSGTNTGL EESMWQLTLS SSESYPERTG APNCVYYMRT 60 GFCGYGGGCR YNHPRDRAAV AAAVRATGEY PERVGEPPCQ YYLKTGACKF GASCKFHHPK 120 HGGGSLSQAP LNIYGYPLRP GEKECSYYLK MGQCKFGITC KFHHPQPAGT SLPASAPQFY 180 QQVQSPTVPL PDQYGGASTS LRVARPPILP GSYVQGAYGP LLLSPGVVPF PGWNPYSASV 240 SPALSPGAQP AVGATSLYGV TQLNSSTSAF ARPYTPLPSS SGPSGSNQKE QVFPERPGEP 300 ECQYFLRTGD CKFGLACRFH HPRDQVVAQP LLNPIGLPLR PVSMVTHLI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-161 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OIV95406 |