PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OIV94664 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 145aa MW: 15031.7 Da PI: 8.073 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 43.6 | 4.9e-14 | 28 | 52 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L+YP+GA+sV+Ca+C +V OIV94664 28 CSGCRIVLMYPIGATSVCCAVCKAV 52 ***********************98 PP | |||||||
2 | zf-LSD1 | 46.8 | 4.8e-15 | 67 | 91 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV OIV94664 67 CGGCHTLLMYIRGATSVQCSCCHTV 91 ************************9 PP | |||||||
3 | zf-LSD1 | 37.6 | 3.7e-12 | 105 | 129 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ lL+Y +GA+sV+Ca+C +V OIV94664 105 CGNCKMLLMYQYGARSVKCAVCSHV 129 ***********************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 145 aa Download sequence |
MPVPLAPYPT TPAPYSPTTN GGQSQLVCSG CRIVLMYPIG ATSVCCAVCK AVTAVPPPGT 60 EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEANQV AHVNCGNCKM LLMYQYGARS 120 VKCAVCSHVT SIGASASTIE QKLST |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32540.3 | 1e-63 | LSD family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OIV94664 |