PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIV92996

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 338aa MW: 36743.3 Da PI: 6.7787

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIV92996	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.1	4.1e-10	75	99	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f+ GtC+y +C+FaH+ OIV92996 75 FKTKLCCKFRT-GTCPYVTNCNFAHS 99 69*******.***********8 PP
2	zf-CCCH	18.7	3e-06	145	170	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ OIV92996 145 YKGRHCKKFYTEEGCPYGDSCTFLHD 170 78888********************7 PP
3	zf-CCCH	43	7.5e-14	218	243	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg OIV92996 218 WKTRICNKWEMTGYCPFGNKCHFAHG 243 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MDHTRDSNVV QIITGGENWS SSVSGDQSVW ATEDDYRFFN TNNDADSTPK RSRNSQEATP 60 SSSNNRSKAI GKMFFKTKLC CKFRTGTCPY VTNCNFAHSI EELRRPPPNW QEIVAAHEEE 120 KPVPPVEEFQ IPSLSGYSGE VQRSYKGRHC KKFYTEEGCP YGDSCTFLHD ENSRNRESVA 180 ISLGPGGYGG GSGGGDGGGA GSSGGGGGGS SNLKPSNWKT RICNKWEMTG YCPFGNKCHF 240 AHGATELSTH GEFVEGENGD TTFAGTPDTK HGGLPSKTPA DSVVASVIPV AHSDVYHIGV 300 PSQRPPIVIQ RPGQRTHQKW KGPDKISRIY GDWIDDIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-112	C3H family protein

Link Out ? help Back to Top
Ensembl	OIV92996