PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIV92816
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
Family LSD
Protein Properties Length: 154aa    MW: 16014.8 Da    PI: 7.4489
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIV92816genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1443.7e-142852125
   zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
              C+gCr lL+YP GA+sV+Ca+C++V
  OIV92816 28 CSGCRSLLMYPVGATSVCCAVCNAV 52
              ************************9 PP

2zf-LSD146.46.4e-1576100125
   zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
               CggC+tlL+Y rGA+sV+C++C+t+
  OIV92816  76 CGGCHTLLMYIRGATSVQCSCCHTI 100
               ***********************97 PP

3zf-LSD136.58.1e-12114138125
   zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
               Cg+C  lL+Y +GA+sV+Ca+C +V
  OIV92816 114 CGNCNMLLMYQYGARSVKCAVCTFV 138
               **********************998 PP

Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    
MPVPLAPYPT NPAPYSPPVN GGQSQLVCSG CRSLLMYPVG ATSVCCAVCN AVTTVPPPDT  60
LLAFVCTGTE MAQLVCGGCH TLLMYIRGAT SVQCSCCHTI NLALEANQVA HVNCGNCNML  120
LMYQYGARSV KCAVCTFVTS VGASASIIEQ KLST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.18e-63LSD family protein