PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIV92816 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Family | LSD | ||||||||
Protein Properties | Length: 154aa MW: 16014.8 Da PI: 7.4489 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 44 | 3.7e-14 | 28 | 52 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr lL+YP GA+sV+Ca+C++V OIV92816 28 CSGCRSLLMYPVGATSVCCAVCNAV 52 ************************9 PP | |||||||
2 | zf-LSD1 | 46.4 | 6.4e-15 | 76 | 100 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+t+ OIV92816 76 CGGCHTLLMYIRGATSVQCSCCHTI 100 ***********************97 PP | |||||||
3 | zf-LSD1 | 36.5 | 8.1e-12 | 114 | 138 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C lL+Y +GA+sV+Ca+C +V OIV92816 114 CGNCNMLLMYQYGARSVKCAVCTFV 138 **********************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence |
MPVPLAPYPT NPAPYSPPVN GGQSQLVCSG CRSLLMYPVG ATSVCCAVCN AVTTVPPPDT 60 LLAFVCTGTE MAQLVCGGCH TLLMYIRGAT SVQCSCCHTI NLALEANQVA HVNCGNCNML 120 LMYQYGARSV KCAVCTFVTS VGASASIIEQ KLST |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 8e-63 | LSD family protein |
Link Out ? help Back to Top | |
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Ensembl | OIV92816 |