PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIV92554

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 463aa MW: 52867.8 Da PI: 4.7523

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIV92554	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.4	1.4e-09	31	53	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t +C+f+++ G+C yG+rC++ H+ OIV92554 31 TDICSFYQK-GFCAYGSRCRYKHV 53 689****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MSNRFCKFYA RGACLKGEQC NFFHESKDTL TDICSFYQKG FCAYGSRCRY KHVKASEASS 60 SANGHQALAS DSDVAHTTEG TSSWIPKTMK LSSSDECARN SQQKQMGDVG ESSTRGDIPS 120 EHFFCQFSAA TCPIGDKCSR VHGSKCLYCR KHCLHPTDRK KKENHLRTCE KKEKYLQALK 180 NSQEIECNVC LDRVLSKPKP AECKFGVLPE CNHAYCLSCI RNWRNSAPTS GFDMSNNNAN 240 TVRTCPVCRK LSYYVIPSDI WYSTNEEKQE IIDNYKANCR LIDCKHFNFG NGNCPFGNIC 300 FYKHTVKPGS YTWIHNRPPP RRRPNNYDMY DMLDMLSEVD LSSGELYSIM RGSGLYNDMD 360 PFEMMAISDA MASGDGPCLG PFDSDYDDYY DYDYDDDDDD DEVDMDFFQM TSLSEALASG 420 VDDFGPEDFE NDEMRPMEAA LLSMMMHYNI EEEGEEEYSD EYY

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MSNRFCKFYA RGACLKGEQC NFFHESKDTL TDICSFYQKG FCAYGSRCRY KHVKASEASS  60
SANGHQALAS DSDVAHTTEG TSSWIPKTMK LSSSDECARN SQQKQMGDVG ESSTRGDIPS  120
EHFFCQFSAA TCPIGDKCSR VHGSKCLYCR KHCLHPTDRK KKENHLRTCE KKEKYLQALK  180
NSQEIECNVC LDRVLSKPKP AECKFGVLPE CNHAYCLSCI RNWRNSAPTS GFDMSNNNAN  240
TVRTCPVCRK LSYYVIPSDI WYSTNEEKQE IIDNYKANCR LIDCKHFNFG NGNCPFGNIC  300
FYKHTVKPGS YTWIHNRPPP RRRPNNYDMY DMLDMLSEVD LSSGELYSIM RGSGLYNDMD  360
PFEMMAISDA MASGDGPCLG PFDSDYDDYY DYDYDDDDDD DEVDMDFFQM TSLSEALASG  420
VDDFGPEDFE NDEMRPMEAA LLSMMMHYNI EEEGEEEYSD EYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	6e-89	C3H family protein

Link Out ? help Back to Top
Ensembl	OIV92554