PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIV92553

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 373aa MW: 41760.5 Da PI: 6.9027

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIV92553	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.7	4.7e-09	50	70	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C yG+rC++ H+ OIV92553 50 ICTFYQK-GVCAYGSRCRYDHV 70 7****.***********7 PP
2	zf-CCCH	18.9	2.7e-06	156	176	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ fa+ G C++G++C+ +Hg OIV92553 156 ICS-FAAAGSCPRGEKCPHIHG 176 677.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MRIWFLISDP DVILKASVFV VLCKFFAHGA CLKGEHCEFS HDWKVPANNI CTFYQKGVCA 60 YGSRCRYDHV KASRSLSSTP SSSVTEHQPV VLDSAVFANT IITSNGIPTT ADDFPSGGPY 120 LLPSQPAWIQ ESEYQDFLGE DDVAQSRITS PSELSICSFA AAGSCPRGEK CPHIHGDLCP 180 TCGKHCLHPF RPEEREEHTK SCENRQKHLE ALKRSQEIEC SVCLERVLSK PTAAERKFGL 240 LSECDHPFCI SCIRNWRSSN PTLGMDVNGT LRACPICRKL SYFVVPSVIW YSTNEEKLEI 300 VDSYKAKLKS MDCKHFDFGD GNCPFGTSCF YKHAYRDGRL EEVVLRHLGA ADGDTVIAKE 360 IRLSDFLANM HLR

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MRIWFLISDP DVILKASVFV VLCKFFAHGA CLKGEHCEFS HDWKVPANNI CTFYQKGVCA  60
YGSRCRYDHV KASRSLSSTP SSSVTEHQPV VLDSAVFANT IITSNGIPTT ADDFPSGGPY  120
LLPSQPAWIQ ESEYQDFLGE DDVAQSRITS PSELSICSFA AAGSCPRGEK CPHIHGDLCP  180
TCGKHCLHPF RPEEREEHTK SCENRQKHLE ALKRSQEIEC SVCLERVLSK PTAAERKFGL  240
LSECDHPFCI SCIRNWRSSN PTLGMDVNGT LRACPICRKL SYFVVPSVIW YSTNEEKLEI  300
VDSYKAKLKS MDCKHFDFGD GNCPFGTSCF YKHAYRDGRL EEVVLRHLGA ADGDTVIAKE  360
IRLSDFLANM HLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-159	C3H family protein

Link Out ? help Back to Top
Ensembl	OIV92553