PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIV91729

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 817aa MW: 91621.9 Da PI: 4.175

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIV91729	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.9	1.4e-07	342	361	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 C+ffa+ G+C +G++C+F H OIV91729 342 VCDFFAK-GWCIRGSSCRFLH 361 5****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 817 aa Download sequence
MPLSDSPIAD DSDNDPSLEE DDPDEEDDPE EEDVEEVEEV EDEEEEVEEV EEEEEVEEEE 60 EVEEEEEEEE VEEEEEEEVE VEEEEEVEVE EEVEEEEEFE EEVEEEEEEE EEEEEEEEEE 120 KVVEEDKVTV QDESRAPDND RKDSCLHMES PGQDGNLKPV SSMAENNEVM PSSSMHLSEK 180 NEAILEASVP SCETLTLNKE EFHSKHEISS NPKSRENATI VEGGNSQGLN VDTENAGSLP 240 QSKTFVSCNE LSCNNEAELC GVEDMDARAT KSSNNTGKDV AIGLPERDDF VKDAVGGQKS 300 KNEVMLSEME TSDSVKEKTP RRTRSGSPNA EMKDGNKRLR HVCDFFAKGW CIRGSSCRFL 360 HIKDPVNNTD QETDGDSITA NQTRELELKE GVRGNVERSR TNEQEASPTW HPSQEKQKFP 420 LRDNLLQESR FAFNASSNYF NTNHSSYSTR SEGMATAQNQ HMYNGYTSAI LSHSPNSSLA 480 AQFPATSMSL SHRSGISLPF SSSYSDRDYH APRSTFSVSG QEDLPLGSSS SRGPPHSSGY 540 KSKVDSYDWE PSVPFQPSFF ITSMSGSSPG DLYDPLRDSI EIPNIGDGSL KASLLIHRPS 600 VEAPPQVQTY GDSAVVGKHK SDVNDAKSSV SSHIRINENE LSKRSVPHEK DCLVTEAEIT 660 SGTDENYQNS KIGMEQYTID VEDFTTMEKE RTGRDTRHHG EGSGHKKRRV DRDKKISEMD 720 VDSVLDGSLQ KESKALKNFH AVLVDHVKDL LKPYWHEGHL SKDAHIVIVK KSVDKVISTL 780 EPHQIPTTID TAKHYVSSCR MKIAKLVDGY VNKYSKS

Sequence ? help Back to Top

Protein Sequence Length: 817 aa Download sequence

MPLSDSPIAD DSDNDPSLEE DDPDEEDDPE EEDVEEVEEV EDEEEEVEEV EEEEEVEEEE  60
EVEEEEEEEE VEEEEEEEVE VEEEEEVEVE EEVEEEEEFE EEVEEEEEEE EEEEEEEEEE  120
KVVEEDKVTV QDESRAPDND RKDSCLHMES PGQDGNLKPV SSMAENNEVM PSSSMHLSEK  180
NEAILEASVP SCETLTLNKE EFHSKHEISS NPKSRENATI VEGGNSQGLN VDTENAGSLP  240
QSKTFVSCNE LSCNNEAELC GVEDMDARAT KSSNNTGKDV AIGLPERDDF VKDAVGGQKS  300
KNEVMLSEME TSDSVKEKTP RRTRSGSPNA EMKDGNKRLR HVCDFFAKGW CIRGSSCRFL  360
HIKDPVNNTD QETDGDSITA NQTRELELKE GVRGNVERSR TNEQEASPTW HPSQEKQKFP  420
LRDNLLQESR FAFNASSNYF NTNHSSYSTR SEGMATAQNQ HMYNGYTSAI LSHSPNSSLA  480
AQFPATSMSL SHRSGISLPF SSSYSDRDYH APRSTFSVSG QEDLPLGSSS SRGPPHSSGY  540
KSKVDSYDWE PSVPFQPSFF ITSMSGSSPG DLYDPLRDSI EIPNIGDGSL KASLLIHRPS  600
VEAPPQVQTY GDSAVVGKHK SDVNDAKSSV SSHIRINENE LSKRSVPHEK DCLVTEAEIT  660
SGTDENYQNS KIGMEQYTID VEDFTTMEKE RTGRDTRHHG EGSGHKKRRV DRDKKISEMD  720
VDSVLDGSLQ KESKALKNFH AVLVDHVKDL LKPYWHEGHL SKDAHIVIVK KSVDKVISTL  780
EPHQIPTTID TAKHYVSSCR MKIAKLVDGY VNKYSKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-34	C3H family protein

Link Out ? help Back to Top
Ensembl	OIV91729