PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIV91080

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 588aa MW: 64862.5 Da PI: 8.0945

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIV91080	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.9	4.1e-09	52	74	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C +f+ tG+C+yGd+C++ H+ OIV91080 52 PICIHFLNTGFCSYGDSCRYTHP 74 79******************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence
MAPKKYYCDY CDKQFQDTPS DRKRHARGIM HQQAKARWYD SFNIQQPLSN APICIHFLNT 60 GFCSYGDSCR YTHPNPNNTI TSQVQQQGGT GSVVRDRMGV SWGNLPPSLY PPPEAGYPSL 120 PFIDWVNNWS STGLTSPRLM KLRYKNLITE LSFHARLDKH THEKQLLPIS LISLPPSPSP 180 EALSPSVNAP FFNVKSFGAV GDGVCDDTQA FKLAWDTACQ AEESGTLLVP NGYIFMIQST 240 IFTGPCKSGL TFKVGGTIVP PDGPDSWPRN SSKRQWLVFY RINGMSMQGN GLIDGRGEKW 300 WNLPCKPHKG NNGTTLPGPC DSPVAIRFFM SSNLTVQGLK IKNSAQFHFR FDNCQNVLID 360 RLIIKSPALS PNTDGIHIEN TNNVNIYNSV ISNGDDCVSI GAGCYNVNIR NITCGPSHGI 420 SIGSLGSHNS RACVSNITVS DSVIKHSDNG VRIKTWQGGE GSVSKVTFSN IHMDIVRNPI 480 VIDQYYCLSK NCINQSTAVS VSHVTYSNIK GTYDVRSRPM RFACSDSVPC TNLTLSEVEL 540 LPAQGYILAT PFCWNAYGTM HTLTIPPVLC FLDGNPPMLP QDDDVVRD

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence

MAPKKYYCDY CDKQFQDTPS DRKRHARGIM HQQAKARWYD SFNIQQPLSN APICIHFLNT  60
GFCSYGDSCR YTHPNPNNTI TSQVQQQGGT GSVVRDRMGV SWGNLPPSLY PPPEAGYPSL  120
PFIDWVNNWS STGLTSPRLM KLRYKNLITE LSFHARLDKH THEKQLLPIS LISLPPSPSP  180
EALSPSVNAP FFNVKSFGAV GDGVCDDTQA FKLAWDTACQ AEESGTLLVP NGYIFMIQST  240
IFTGPCKSGL TFKVGGTIVP PDGPDSWPRN SSKRQWLVFY RINGMSMQGN GLIDGRGEKW  300
WNLPCKPHKG NNGTTLPGPC DSPVAIRFFM SSNLTVQGLK IKNSAQFHFR FDNCQNVLID  360
RLIIKSPALS PNTDGIHIEN TNNVNIYNSV ISNGDDCVSI GAGCYNVNIR NITCGPSHGI  420
SIGSLGSHNS RACVSNITVS DSVIKHSDNG VRIKTWQGGE GSVSKVTFSN IHMDIVRNPI  480
VIDQYYCLSK NCINQSTAVS VSHVTYSNIK GTYDVRSRPM RFACSDSVPC TNLTLSEVEL  540
LPAQGYILAT PFCWNAYGTM HTLTIPPVLC FLDGNPPMLP QDDDVVRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	6e-30	C3H family protein

Link Out ? help Back to Top
Ensembl	OIV91080