PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIV90751

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 459aa MW: 50538.1 Da PI: 8.3185

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIV90751	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.6	3.3e-11	55	81	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G +C+F+H+p OIV90751 55 PGEPDCSYYIRTGLCRFGVTCRFNHPP 81 5789*********************97 PP
2	zf-CCCH	30.6	5.9e-10	86	105	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCk+G++CkF+H++ OIV90751 86 YYLKTGTCKFGATCKFHHPR 105 8*****************96 PP
3	zf-CCCH	38.4	2e-12	127	151	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ OIV90751 127 EPECTYYLRTGQCKFGNTCKFHHPQ 151 799********************97 PP
4	zf-CCCH	37.8	3.2e-12	321	347	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ OIV90751 321 PGQPECQFYMKTGDCKFGAVCRFHHPR 347 5789*********************96 PP
5	zf-CCCH	38	2.8e-12	367	393	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ OIV90751 367 PGEPLCVFYSRYGICKFGPSCKFDHPM 393 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MVLLNLYYFI HSLIGLGYAS FKKLTYSYHP ISDAQWQIKS ISSETMEAGV YPERPGEPDC 60 SYYIRTGLCR FGVTCRFNHP PNRKLYYLKT GTCKFGATCK FHHPREQAGS AGRVALNTLG 120 YPLRPNEPEC TYYLRTGQCK FGNTCKFHHP QPSNMVLSLR GSPVYPTVQS PTAPGQQSYA 180 GGIANWSRAS YIASPRWQGP SSYTPLILPQ GVVSVPGWSA YSNTLVINPL TLYNATVSLE 240 PTIAEMCQHP DGMFILQGQM RSISASDSPQ QIIGNDQTYG TSRQDEVTNS GSQGEYSQFR 300 SGSVPVGFYA LQRENIFPER PGQPECQFYM KTGDCKFGAV CRFHHPRERL IPVPDCVLSP 360 IGLPLRPGEP LCVFYSRYGI CKFGPSCKFD HPMGIFTYNL SASPSAEAPG RGLLGSSSGT 420 AALNLSSRPA ESGSSKPRRL SISETRQIPS GDDDIDDEG

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MVLLNLYYFI HSLIGLGYAS FKKLTYSYHP ISDAQWQIKS ISSETMEAGV YPERPGEPDC  60
SYYIRTGLCR FGVTCRFNHP PNRKLYYLKT GTCKFGATCK FHHPREQAGS AGRVALNTLG  120
YPLRPNEPEC TYYLRTGQCK FGNTCKFHHP QPSNMVLSLR GSPVYPTVQS PTAPGQQSYA  180
GGIANWSRAS YIASPRWQGP SSYTPLILPQ GVVSVPGWSA YSNTLVINPL TLYNATVSLE  240
PTIAEMCQHP DGMFILQGQM RSISASDSPQ QIIGNDQTYG TSRQDEVTNS GSQGEYSQFR  300
SGSVPVGFYA LQRENIFPER PGQPECQFYM KTGDCKFGAV CRFHHPRERL IPVPDCVLSP  360
IGLPLRPGEP LCVFYSRYGI CKFGPSCKFD HPMGIFTYNL SASPSAEAPG RGLLGSSSGT  420
AALNLSSRPA ESGSSKPRRL SISETRQIPS GDDDIDDEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-152	C3H family protein

Link Out ? help Back to Top
Ensembl	OIV90751