PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIV89364 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 178aa MW: 19815.7 Da PI: 6.5197 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.2 | 7.9e-22 | 11 | 57 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 enks r vtfskR+ g++KKA ELS+LC++ev v++fs gk y + OIV89364 11 MENKSSRLVTFSKRKSGLFKKAMELSILCGVEVVVLLFSVGGKAYSF 57 79*****************************************9988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence |
MSHKNIEMKL MENKSSRLVT FSKRKSGLFK KAMELSILCG VEVVVLLFSV GGKAYSFGHP 60 SIEAVTKKFL HQGEGSHVSH GESSNDDGNI GKLSHQLQEL NDQIQVEKDK KKELDKALSK 120 YKFINGKLPI DNLSFEELVE FKASLVEAQD NMPASNDELE VASSLLLLRE NGMYETGI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 2e-24 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIV89364 |