PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIV89200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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Family | C3H | ||||||||
Protein Properties | Length: 362aa MW: 39983.5 Da PI: 7.3278 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 47.5 | 2.9e-15 | 278 | 303 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tGtC+yGd C+FaHg OIV89200 278 FKTELCNKWQETGTCPYGDHCQFAHG 303 79***********************8 PP | |||||||
2 | zf-CCCH | 18.3 | 4.1e-06 | 316 | 340 | 1 | 25 |
--S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaH 25 ykte Cr ++ G C+yG rC+F H OIV89200 316 YKTEVCRMVLA-GvVCPYGHRCHFRH 340 9**********.66**********88 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence |
MHNNNACSPS SNRGYGANTA DADQMQSNSA AAFASFYSAL LNENIPPSIS ASCSNLGGGG 60 YSYSSDSGTQ SHGYDSCFIQ KHQDMVNRHS MCLTRLVETS KEVEALRQEN AQLHAVNNEL 120 QKNLNLVIQA SLENQFGGET QTTAFDVVHG FRGFHVGDGK ENCADWNMNI NNNNNNNNCK 180 NEKVEVSEES PTSVIENNGV EVERFALPKS ISVRSNGYLK TQSAAVVPTN TVATRIKGAT 240 RPRASSTPPP DVVQKVYVRG GQKEEEPLEM VVYNQGMFKT ELCNKWQETG TCPYGDHCQF 300 AHGIGELRPV IRHPRYKTEV CRMVLAGVVC PYGHRCHFRH ALTEQEKALS HPKPRAMKQL 360 DR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 3e-82 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OIV89200 |