PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIV89066

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

LSD

Protein Properties

Length: 172aa MW: 18112.8 Da PI: 8.4357

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIV89066	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	44.5	2.5e-14	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L YPrGA++V+CalC+t+ OIV89066 7 CNGCRNILLYPRGATNVCCALCNTI 31 ***********************97 PP
2	zf-LSD1	47.9	2.1e-15	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y rGA+sVRC++C+tV OIV89066 46 CGGCRTLLMYARGATSVRCSCCQTV 70 ************************9 PP
3	zf-LSD1	48.8	1.1e-15	84	107	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP+GApsV+CalC+ OIV89066 84 CGNCRTTLMYPYGAPSVKCALCHY 107 **********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence
MQSQLVCNGC RNILLYPRGA TNVCCALCNT ITSVPPPGME MSQIYCGGCR TLLMYARGAT 60 SVRCSCCQTV NLVPASNQVS HIHCGNCRTT LMYPYGAPSV KCALCHYITN ASTTNGRLPI 120 PGQRPDGTTN PGTVSSATTS QSQTVVVENP MSVDSSGKLV SNVVVGVTTD KK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	4e-72	LSD family protein

Link Out ? help Back to Top
Ensembl	OIV89066