PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0809s0115.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HB-PHD | ||||||||
Protein Properties | Length: 518aa MW: 57965.5 Da PI: 5.534 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.3e-09 | 293 | 336 | 10 | 53 |
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +e L ++F+++ ps++ + L+k lgL+ ++V WF+N R+ Kaladp0809s0115.2.p 293 VAVEKLRQVFAEDELPSKSVKDNLSKLLGLSPEKVNKWFKNARY 336 56899*************************************97 PP | |||||||
2 | PHD | 33.3 | 1.1e-11 | 18 | 72 | 1 | 50 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 +C+ C+ + +++++lCdg C+ +fH+kCl+++l+++++p + w+C+ C++ Kaladp0809s0115.2.p 18 ICAKCKLreAFPDNDIILCDGiCNCAFHQKCLDPPLSTDNIPPEdqGWFCKFCQC 72 588888854455********88*******************99999*******97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 518 aa Download sequence |
MEDSLIAPDG SVHHEHIICA KCKLREAFPD NDIILCDGIC NCAFHQKCLD PPLSTDNIPP 60 EDQGWFCKFC QCRMDIIDVM NAHLGTHISM GSNWQDIFSE EASIVDGADD PPHIGEVQWP 120 SDDSNDDDYD PEKKECSYST GLMEAEDSSS LSRCDSVSIS WSFEEEAFSD LQGSQHSGMP 180 AVMNSACFQS CADSAGTMTD MTIEGCRQRR TVDYKKLYIE MFGKDAPGNE QLSEDEDWGP 240 GKRIRKEKES YAASTLMTLF SCENIDPDDA VQAKEEHHQG AHSRRPLFRI PPVAVEKLRQ 300 VFAEDELPSK SVKDNLSKLL GLSPEKVNKW FKNARYLALR NRKMGSSIGC PNPIGTCSNE 360 SPLNEQCVEN KVICGDTLNG GSSSSLVNAS MIKQSGYRAQ SLSNLRKKKR HRRTLLGLSS 420 CNTTKVMMDF NENVSLKQQL QLLKSASKKR IWNHLDFKEG FNRRPTRVEM EMERLCTIKC 480 RVDGMLENLS VLLKQKSGTP KAEAVVYVPI AEVKEKF* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.1 | 2e-52 | HB-PHD family protein |