PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0809s0115.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HB-PHD

Protein Properties

Length: 622aa MW: 69949.5 Da PI: 7.2088

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0809s0115.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.3	2.9e-09	397	440	10	53
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +e L ++F+++ ps++ + L+k lgL+ ++V WF+N R+ Kaladp0809s0115.1.p 397 VAVEKLRQVFAEDELPSKSVKDNLSKLLGLSPEKVNKWFKNARY 440 56899*************************************97 PP
2	PHD	33.7	8.1e-12	122	176	1	50
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 +C+ C+ + +++++lCdg C+ +fH+kCl+++l+++++p + w+C+ C++ Kaladp0809s0115.1.p 122 ICAKCKLreAFPDNDIILCDGiCNCAFHQKCLDPPLSTDNIPPEdqGWFCKFCQC 176 588888854455******88***************99999*****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence
MLPAEEDVVV ADVSKRRRKR RRQGKKVASD DAARLQRRAR YLLIKIKLEQ NLIDAYAGEG 60 WKGQSREKIR PEKELQRAYK QILKCKLGIR DAIRQLESLG SVGSMEDSLI APDGSVHHEH 120 IICAKCKLRE AFPDNDIILC DGICNCAFHQ KCLDPPLSTD NIPPEDQGWF CKFCQCRMDI 180 IDVMNAHLGT HISMGSNWQD IFSEEASIVD GADDPPHIGE VQWPSDDSND DDYDPEKKEC 240 SYSTGLMEAE DSSSLSRCDS VSISWSFEEE AFSDLQGSQH SGMPAVMNSA CFQSCADSAG 300 TMTDMTIEGC RQRRTVDYKK LYIEMFGKDA PGNEQLSEDE DWGPGKRIRK EKESYAASTL 360 MTLFSCENID PDDAVQAKEE HHQGAHSRRP LFRIPPVAVE KLRQVFAEDE LPSKSVKDNL 420 SKLLGLSPEK VNKWFKNARY LALRNRKMGS SIGCPNPIGT CSNESPLNEQ CVENKVICGD 480 TLNGGSSSSL VNASMIKQSG YRAQSLSNLR KKKRHRRTLL GLSSCNTTKV MMDFNENVSL 540 KQQLQLLKSA SKKRIWNHLD FKEGFNRRPT RVEMEMERLC TIKCRVDGML ENLSVLLKQK 600 SGTPKAEAVV YVPIAEVKEK F*

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence

MLPAEEDVVV ADVSKRRRKR RRQGKKVASD DAARLQRRAR YLLIKIKLEQ NLIDAYAGEG  60
WKGQSREKIR PEKELQRAYK QILKCKLGIR DAIRQLESLG SVGSMEDSLI APDGSVHHEH  120
IICAKCKLRE AFPDNDIILC DGICNCAFHQ KCLDPPLSTD NIPPEDQGWF CKFCQCRMDI  180
IDVMNAHLGT HISMGSNWQD IFSEEASIVD GADDPPHIGE VQWPSDDSND DDYDPEKKEC  240
SYSTGLMEAE DSSSLSRCDS VSISWSFEEE AFSDLQGSQH SGMPAVMNSA CFQSCADSAG  300
TMTDMTIEGC RQRRTVDYKK LYIEMFGKDA PGNEQLSEDE DWGPGKRIRK EKESYAASTL  360
MTLFSCENID PDDAVQAKEE HHQGAHSRRP LFRIPPVAVE KLRQVFAEDE LPSKSVKDNL  420
SKLLGLSPEK VNKWFKNARY LALRNRKMGS SIGCPNPIGT CSNESPLNEQ CVENKVICGD  480
TLNGGSSSSL VNASMIKQSG YRAQSLSNLR KKKRHRRTLL GLSSCNTTKV MMDFNENVSL  540
KQQLQLLKSA SKKRIWNHLD FKEGFNRRPT RVEMEMERLC TIKCRVDGML ENLSVLLKQK  600
SGTPKAEAVV YVPIAEVKEK F*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	15	21	KRRRKRR
2	16	22	KRRRKRR
3	17	47	RRKRRRQGKKVASDDAARLQRRARYLLIKIK
4	18	22	RKRRR
5	18	48	RRKRRRQGKKVASDDAARLQRRARYLLIKIK
6	19	49	RRKRRRQGKKVASDDAARLQRRARYLLIKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	1e-88	HB-PHD family protein