PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0278s0008.4.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 843aa    MW: 96048.3 Da    PI: 9.3173
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0278s0008.4.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.1e-07196239346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rWT  Ed+ l+  vk+  + +W  Ia  +g++Rt+ qc  r+q 
  Kaladp0278s0008.4.p 196 RWTRTEDKELLLIVKEKEMSNWIDIAVSLGTNRTPFQCLARFQR 239
                          9***************************************9995 PP
2Myb_DNA-binding35.52.3e-11248291246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            W +eEd +l  av+ +G  +W  +a+ +  +Rt+ qc +rw k
  Kaladp0278s0008.4.p 248 REWEEEEDARLCAAVRVFGESNWQMVASVLD-KRTGTQCSNRWKK 291
                          68*****************************.***********98 PP
3Myb_DNA-binding43.76.5e-14301345247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          grWT +Ed++ +  vk++G ++W++Ia+ ++ gRt  qc++rw + 
  Kaladp0278s0008.4.p 301 GRWTIDEDKRMKVSVKLFGAKCWSKIAQFVP-GRTQVQCRERWVNC 345
                          8******************************.***********986 PP
4Myb_DNA-binding42.61.4e-13354395346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +WT++Ed++l  a++++    W+++a++++  Rt++qc+ rw  
  Kaladp0278s0008.4.p 354 PWTEDEDLKLMTAITEYNYC-WSKVAACIP-PRTDNQCRRRWMV 395
                          8*****************99.*********.9**********86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    
MNPRCFQSRV QIEARIEESK KLKDRVKILK DFQVSTRKRV GLVLSQKKDH RVQLISAPKR  60
GEKKASAMKF GPEDNRDVAF YKDAITKFPL ALQRQRWSNE ERDNLRKGIK QEFQKALLEK  120
SVDLISYSEG SYGISSDIDN VMASIKGLEI TPENIRAYLP KVNWDNFASI YHQGRSGAEC  180
EARWLNWEDP LRNNTRWTRT EDKELLLIVK EKEMSNWIDI AVSLGTNRTP FQCLARFQRS  240
LNAQMVKREW EEEEDARLCA AVRVFGESNW QMVASVLDKR TGTQCSNRWK KSLNPARVRV  300
GRWTIDEDKR MKVSVKLFGA KCWSKIAQFV PGRTQVQCRE RWVNCLDPSL NWDPWTEDED  360
LKLMTAITEY NYCWSKVAAC IPPRTDNQCR RRWMVLCPDD VYRLQAAKKI QQVALISNFV  420
DRETERPDLG PEDFVPPLIL CPAFEPYSEE PTNKRKRKRR EKRASPMNNA EYNMGCSDSQ  480
KKKRCPRRRK EAQVDNEATL GAVDVNEATE AVICLNEYVG TVENSTIVHP GSFECNEQGK  540
ADSSLYLELE PTDTGDEGKC GRSNYLKRKK YKPRRKARAE NVPVQSKAFL PAAQSESMLM  600
NHSFSHEIPV ENNTTSTQKR RTTIKQNKKK SCSIYKKNDY EFAAGTLSLQ MQTPDKSASI  660
PGAIVATSKS CKRERVTASS SLKDAVSFHR PSSCSCCLES IVCHQGAVNG TRVNGELIAG  720
KAAACLEEND FIPLASLGKR DKNFSQNEAE YAQEANSRSE MNNKFCCEQP ATSLGEDDSL  780
ALTSFIKRKR NVCNARIENG HNVDKGRKME IISVEQVGAG LNEDDIPLAL FIKKVKRVKE  840
KI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1454460KRKRKRR
2454483KRKRKRREKRASPMNNAEYNMGCSDSQKKK
3455484KRKRKRREKRASPMNNAEYNMGCSDSQKKK
4455460RKRKRR
5455462RKRKRREK
6455463RKRKRREKR
7456485KRKRKRREKRASPMNNAEYNMGCSDSQKKK
8457486KRKRKRREKRASPMNNAEYNMGCSDSQKKK
9457464RKRKRREK
10486490PRRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.21e-147MYB family protein