PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0278s0008.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 1029aa MW: 116774 Da PI: 8.2098

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0278s0008.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.6	5.2e-07	382	425	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rWT Ed+ l+ vk+ + +W Ia +g++Rt+ qc r+q Kaladp0278s0008.1.p 382 RWTRTEDKELLLIVKEKEMSNWIDIAVSLGTNRTPFQCLARFQR 425 9***************************************9995 PP
2	Myb_DNA-binding	35.2	2.9e-11	434	477	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 W +eEd +l av+ +G +W +a+ + +Rt+ qc +rw k Kaladp0278s0008.1.p 434 REWEEEEDARLCAAVRVFGESNWQMVASVLD-KRTGTQCSNRWKK 477 68***************************.*********98 PP
3	Myb_DNA-binding	43.3	8.3e-14	487	531	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grWT +Ed++ + vk++G ++W++Ia+ ++ gRt qc++rw + Kaladp0278s0008.1.p 487 GRWTIDEDKRMKVSVKLFGAKCWSKIAQFVP-GRTQVQCRERWVNC 531 8****************************.*********986 PP
4	Myb_DNA-binding	42.3	1.7e-13	540	581	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT++Ed++l a++++ W+++a++++ Rt++qc+ rw Kaladp0278s0008.1.p 540 PWTEDEDLKLMTAITEYNYC-WSKVAACIP-PRTDNQCRRRWMV 581 8***************99.*****.9********86 PP

Sequence ? help Back to Top
Protein Sequence Length: 1029 aa Download sequence
MAAHLTTDGG GDEKKVGPEE EAFSGSENDD EFDQDMESLR RACMLAGTDL ADLNPPALTL 60 PPHSDSDSDM DDYELARRVC QRLAVTADFE HKPMSMKPLS VVPPDDSDDG EDDFATLRAV 120 QKRFSSYDQK TERSGMENCI QKSEQDSDYL ERHQPDMHEP TLLPVKGSGF PRPAQLLLDS 180 IKKNRLCQKL IHNRLIQIEA RIEESKKLKD RVKILKDFQV STRKRVGLVL SQKKDHRVQL 240 ISAPKRGEKK ASAMKFGPED NRDVAFYKDA ITKFPLALQR QRWSNEERDN LRKGIKQEFQ 300 KALLEKSVDL ISYSEGSYGI SSDIDNVMAS IKGLEITPEN IRAYLPKVNW DNFASIYHQG 360 RSGAECEARW LNWEDPLRNN TRWTRTEDKE LLLIVKEKEM SNWIDIAVSL GTNRTPFQCL 420 ARFQRSLNAQ MVKREWEEEE DARLCAAVRV FGESNWQMVA SVLDKRTGTQ CSNRWKKSLN 480 PARVRVGRWT IDEDKRMKVS VKLFGAKCWS KIAQFVPGRT QVQCRERWVN CLDPSLNWDP 540 WTEDEDLKLM TAITEYNYCW SKVAACIPPR TDNQCRRRWM VLCPDDVYRL QAAKKIQQVA 600 LISNFVDRET ERPDLGPEDF VPPLILCPAF EPYSEEPTNK RKRKRREKRA SPMNNAEYNM 660 GCSDSQKKKR CPRRRKEAQV DNEATLGAVD VNEATEAVIC LNEYVGTVEN STIVHPGSFE 720 CNEQGKADSS LYLELEPTDT GDEGKCGRSN YLKRKKYKPR RKARAENVPV QSKAFLPAAQ 780 SESMLMNHSF SHEIPVENNT TSTQKRRTTI KQNKKKSCSI YKKNDYEFAA GTLSLQMQTP 840 DKSASIPGAI VATSKSCKRE RVTASSSLKD AVSFHRPSSC SCCLESIVCH QGAVNGTRVN 900 GELIAGKAAA CLEENDFIPL ASLGKRDKNF SQNEAEYAQE ANSRSEMNNK FCCEQPATSL 960 GEDDSLALTS FIKRKRNVCN ARIENGHNVD KGRKMEIISV EQVGAGLNED DIPLALFIKK 1020 VKRVKEKI*

Sequence ? help Back to Top

Protein Sequence Length: 1029 aa Download sequence

MAAHLTTDGG GDEKKVGPEE EAFSGSENDD EFDQDMESLR RACMLAGTDL ADLNPPALTL  60
PPHSDSDSDM DDYELARRVC QRLAVTADFE HKPMSMKPLS VVPPDDSDDG EDDFATLRAV  120
QKRFSSYDQK TERSGMENCI QKSEQDSDYL ERHQPDMHEP TLLPVKGSGF PRPAQLLLDS  180
IKKNRLCQKL IHNRLIQIEA RIEESKKLKD RVKILKDFQV STRKRVGLVL SQKKDHRVQL  240
ISAPKRGEKK ASAMKFGPED NRDVAFYKDA ITKFPLALQR QRWSNEERDN LRKGIKQEFQ  300
KALLEKSVDL ISYSEGSYGI SSDIDNVMAS IKGLEITPEN IRAYLPKVNW DNFASIYHQG  360
RSGAECEARW LNWEDPLRNN TRWTRTEDKE LLLIVKEKEM SNWIDIAVSL GTNRTPFQCL  420
ARFQRSLNAQ MVKREWEEEE DARLCAAVRV FGESNWQMVA SVLDKRTGTQ CSNRWKKSLN  480
PARVRVGRWT IDEDKRMKVS VKLFGAKCWS KIAQFVPGRT QVQCRERWVN CLDPSLNWDP  540
WTEDEDLKLM TAITEYNYCW SKVAACIPPR TDNQCRRRWM VLCPDDVYRL QAAKKIQQVA  600
LISNFVDRET ERPDLGPEDF VPPLILCPAF EPYSEEPTNK RKRKRREKRA SPMNNAEYNM  660
GCSDSQKKKR CPRRRKEAQV DNEATLGAVD VNEATEAVIC LNEYVGTVEN STIVHPGSFE  720
CNEQGKADSS LYLELEPTDT GDEGKCGRSN YLKRKKYKPR RKARAENVPV QSKAFLPAAQ  780
SESMLMNHSF SHEIPVENNT TSTQKRRTTI KQNKKKSCSI YKKNDYEFAA GTLSLQMQTP  840
DKSASIPGAI VATSKSCKRE RVTASSSLKD AVSFHRPSSC SCCLESIVCH QGAVNGTRVN  900
GELIAGKAAA CLEENDFIPL ASLGKRDKNF SQNEAEYAQE ANSRSEMNNK FCCEQPATSL  960
GEDDSLALTS FIKRKRNVCN ARIENGHNVD KGRKMEIISV EQVGAGLNED DIPLALFIKK  1020
VKRVKEKI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	640	646	KRKRKRR
2	640	669	KRKRKRREKRASPMNNAEYNMGCSDSQKKK
3	641	670	KRKRKRREKRASPMNNAEYNMGCSDSQKKK
4	641	646	RKRKRR
5	641	648	RKRKRREK
6	641	649	RKRKRREKR
7	642	671	KRKRKRREKRASPMNNAEYNMGCSDSQKKK
8	643	672	KRKRKRREKRASPMNNAEYNMGCSDSQKKK
9	643	650	RKRKRREK
10	672	676	PRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	1e-159	MYB family protein