PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0096s0163.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 343aa MW: 37284 Da PI: 10.3545

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0096s0163.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50	7e-16	82	127	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+ +G+++W++Ia++++ gR++k+c++rw++ Kaladp0096s0163.1.p 82 RGHWRPAEDAKLKHLVAHFGPHNWNLIAHKLQ-GRSGKSCRLRWFNQ 127 899***************************.*********996 PP
2	Myb_DNA-binding	48.3	2.3e-15	135	177	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++ eE+ +l+ a++ lG++ W++Ia+ + gRt++ +k++w+ Kaladp0096s0163.1.p 135 RAFSDEEEGRLLAAHATLGNK-WALIAKLYP-GRTDNAVKNHWHV 177 689****************.*****.*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MVTVKPSIMM SRLLPPAPVS YTCYDPPRKN PSQTRHFHSL LLPPTATDAQ VDAKKTSIVQ 60 GGRPILETDS SDGGAVVKVC SRGHWRPAED AKLKHLVAHF GPHNWNLIAH KLQGRSGKSC 120 RLRWFNQLDP KINKRAFSDE EEGRLLAAHA TLGNKWALIA KLYPGRTDNA VKNHWHVIVA 180 RRLREQSRHC YKQQQQQSLS LGTNTHQLER SINLASNGGG LAYSDDVSRS TIVDEYNPSA 240 TASVDLSLSP TSVAASFGKF HQHHYFLERG SGQSVGAAGS SKHTADTASA AASRNVRGCR 300 VVVCGGNGKE SAQNENNNGV SKSKSKSKIV HYFDFLGLGP AP*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MVTVKPSIMM SRLLPPAPVS YTCYDPPRKN PSQTRHFHSL LLPPTATDAQ VDAKKTSIVQ  60
GGRPILETDS SDGGAVVKVC SRGHWRPAED AKLKHLVAHF GPHNWNLIAH KLQGRSGKSC  120
RLRWFNQLDP KINKRAFSDE EEGRLLAAHA TLGNKWALIA KLYPGRTDNA VKNHWHVIVA  180
RRLREQSRHC YKQQQQQSLS LGTNTHQLER SINLASNGGG LAYSDDVSRS TIVDEYNPSA  240
TASVDLSLSP TSVAASFGKF HQHHYFLERG SGQSVGAAGS SKHTADTASA AASRNVRGCR  300
VVVCGGNGKE SAQNENNNGV SKSKSKSKIV HYFDFLGLGP AP*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17800.1	5e-65	MYB family protein