PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0094s0109.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 295aa MW: 30713.8 Da PI: 9.577

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0094s0109.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.4	1e-07	99	123	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k +lC+ f Ck+Gd+C+FaHg Kaladp0094s0109.1.p 99 KSRLCNKFNSAEGCKFGDKCHFAHG 123 6799****99**********9 PP
2	zf-CCCH	38.4	2e-12	261	285	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC fa+ G C++GdrC+FaHg Kaladp0094s0109.1.p 261 YKTKLCEKFAK-GSCSFGDRCNFAHG 285 9********.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence
MDTRKRGPRE AGISANGGGF KKSKQEMDSS GIGSKSKPCT KFFSTTGCPF GEGCHFLHYV 60 PGGYSAVAQM SNTGPAAPPS TRSMVGPPSM SNASLPTVKS RLCNKFNSAE GCKFGDKCHF 120 AHGDWELGKP INLSFDDPQG VGRSSGRMGG RMMEPPVSAA AACFGATATT KVSVDASLAS 180 AIIGKGGVNS KQICRQTGVK LVIREHESDL NLRNVELEGT FEQISQASAM VRELIGNISA 240 MAGPPKSHGG PGQGTPPSSN YKTKLCEKFA KGSCSFGDRC NFAHGAAELR KPGL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	5e-55	C3H family protein