PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0085s0044.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 652aa    MW: 72291.4 Da    PI: 7.8093
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0085s0044.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.8e-182777656
                         S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         ++t++q++ Le+lF+++ +p++++ ++++++l+L+ rq+k+WFqN+R+++k
  Kaladp0085s0044.1.p 27 RHTPQQIQYLETLFKECAHPDEKQQKQISSQLRLDPRQIKFWFQNKRTQMK 77
                         689*********************************************999 PP
2START118.87.3e-381573783206
                          HHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
                START   3 aeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                          a  a++el+k   +++p+W+      s+n+d + + f + +        + e +++s  vd  +  lv+ lld +  W   ++    +a 
  Kaladp0085s0044.1.p 157 AVGAMDELLKVLRSDKPLWTNNTgrYSLNRDCYEKVFLRPHHykrnisAKLESSKDSCDVDIKAIVLVNMLLDPS-MWLDLFPtlvtSAR 245
                          66799****************9998888888888888777668999999****************9999999999.88888888888*** PP

                          EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
                START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                          tl v+++g      g l+l    + alsplv+ R+f+f+Ry++q + ++wvi+dvS   ++++  +  v  + +lpSg++i+++++ghsk
  Kaladp0085s0044.1.p 246 TLHVVQTGmpgnrsGSLHLNHEIMHALSPLVApREFYFLRYCQQVEIDTWVIADVSYGIPREND-ENLVSNCLKLPSGCMIQDMPDGHSK 334
                          *******************************99******************************9.79999******************** PP

                          EEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 164 vtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                          vtwve v+++++   h  +r +v sgl++ga +w atl++ ce+
  Kaladp0085s0044.1.p 335 VTWVELVEVNDKAStHRFYRDIVTSGLVFGAERWIATLKQMCER 378
                          *********999888***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    
MDSGGANATG VDLEGTGSNR SNKNCNRHTP QQIQYLETLF KECAHPDEKQ QKQISSQLRL  60
DPRQIKFWFQ NKRTQMKTQL ERADNNSLRC QNERFKSENL AMRDALKNIL CPSCGGPPFG  120
KDEHHSNVEK LQLENAILRK ESETISDVEK SVMVETAVGA MDELLKVLRS DKPLWTNNTG  180
RYSLNRDCYE KVFLRPHHYK RNISAKLESS KDSCDVDIKA IVLVNMLLDP SMWLDLFPTL  240
VTSARTLHVV QTGMPGNRSG SLHLNHEIMH ALSPLVAPRE FYFLRYCQQV EIDTWVIADV  300
SYGIPRENDE NLVSNCLKLP SGCMIQDMPD GHSKVTWVEL VEVNDKASTH RFYRDIVTSG  360
LVFGAERWIA TLKQMCERAV LSNGVPANNQ GATLSAEGKM SVMDLSHRMV KTFCATLNMP  420
INKLAFGHVS ETNNSGVRVS TRPCTDPNKP QGMVVCMATS VWLPLCPQHV FAFFQDNNMR  480
SQWDFLSHGN PVKEIARAVS GRHTENNISI FQPVAHDKSH TVILQESLVD FLGYYLIFAP  540
LESTAVKMVV AGLNSSNTPV LPSGFVIVGD GRGVSTKDVN KTSSGKDGGS LLTVAFQMLL  600
SGTTYTKQKH MEVVADANSL IGSTVEKIKA SLTPSGSSKT VTPSESICTP P*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.11e-161HD-ZIP family protein