PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0076s0270.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 422aa MW: 45402.3 Da PI: 8.3078

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0076s0270.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.4	8.9e-12	39	63	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ Cr+++++G C +G++C+F+H++ Kaladp0076s0270.1.p 39 EVVCRYYMKNGVCGFGASCRFNHPR 63 679********************96 PP
2	zf-CCCH	37.2	5.1e-12	86	110	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC+f++ t Ck+G++CkF H++ Kaladp0076s0270.1.p 86 QPLCKFYMTTNNCKFGASCKFDHPK 110 79*********************96 PP
3	zf-CCCH	36.7	7.1e-12	129	154	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++f rtG+Ck+G++CkF H++ Kaladp0076s0270.1.p 129 GEKECSYFVRTGQCKFGATCKFDHPQ 154 7899********************97 PP
4	zf-CCCH	23.8	7.7e-08	299	323	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++Cr+++++G+CkyG +Ck+ H+ Kaladp0076s0270.1.p 299 DQPECRNYFKYGYCKYGFSCKYRHP 323 689*******************998 PP
5	zf-CCCH	24.4	4.9e-08	346	368	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 + C ++a G Ck+G++CkF+H Kaladp0076s0270.1.p 346 VPYCTNYAHQGVCKFGSSCKFNH 368 578******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MGSYGRNREA GGGSASDPQP LEEPMRKLRL SAYPERPSEV VCRYYMKNGV CGFGASCRFN 60 HPRDAAAADA DVIKRGGEEH PERVGQPLCK FYMTTNNCKF GASCKFDHPK HDGETKICLN 120 YLGYPLRPGE KECSYFVRTG QCKFGATCKF DHPQPVHSHV STATLTPGDA SAPLPPKSNT 180 QVHPPPTPAP QPYGVITGNW QVPRTPIFLP APYPCIQGTY GPTFLQPGVF SMPSWGPYPI 240 QMSPVVSPRI QPPIGSGPRY DMSHLSAPAS PYAGPYPLIP TAGAFSIIQK EPILSERPDQ 300 PECRNYFKYG YCKYGFSCKY RHPSEVNASK PTPPHGTTEP PLRAGVPYCT NYAHQGVCKF 360 GSSCKFNHQT GAGTLSYSPS ASSLADLPVA PCPLECSVGT TAPSSSSSEP EIASGSAKES 420 A*

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MGSYGRNREA GGGSASDPQP LEEPMRKLRL SAYPERPSEV VCRYYMKNGV CGFGASCRFN  60
HPRDAAAADA DVIKRGGEEH PERVGQPLCK FYMTTNNCKF GASCKFDHPK HDGETKICLN  120
YLGYPLRPGE KECSYFVRTG QCKFGATCKF DHPQPVHSHV STATLTPGDA SAPLPPKSNT  180
QVHPPPTPAP QPYGVITGNW QVPRTPIFLP APYPCIQGTY GPTFLQPGVF SMPSWGPYPI  240
QMSPVVSPRI QPPIGSGPRY DMSHLSAPAS PYAGPYPLIP TAGAFSIIQK EPILSERPDQ  300
PECRNYFKYG YCKYGFSCKY RHPSEVNASK PTPPHGTTEP PLRAGVPYCT NYAHQGVCKF  360
GSSCKFNHQT GAGTLSYSPS ASSLADLPVA PCPLECSVGT TAPSSSSSEP EIASGSAKES  420
A*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-94	C3H family protein