PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0074s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 223aa MW: 25534 Da PI: 6.8619 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 23.1 | 9.4e-08 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n++ r f kRr ++ K +E+SvL + ++ +i+s+ Kaladp0074s0020.1.p 11 IPNYTARRAAFRKRRDSLIRKLNEISVLAGGAACGVILSP 50 789***************************9999999986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence |
MTRKKVKLAW IPNYTARRAA FRKRRDSLIR KLNEISVLAG GAACGVILSP FEGDPPVFWP 60 PSINEVLERY FSLPELEQQK RLVTAESYIH DEISKFNEII QKEHKMIREA EVSYHMNSIH 120 FHGSHIATLS YDETSDLFWY FEEMKNKCEL RLNQLDPNAS APQPLHPEII MMQEPQMGMV 180 NTNDPTWLTA GNPINAPFPH PQPPFGSHHQ AAGFYNNNNT GY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKVKLAWIPNYTARRAAFRKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 3e-25 | M-type_MADS family protein |