PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0073s0028.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family RAV
Protein Properties Length: 388aa    MW: 42827.4 Da    PI: 8.8236
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0073s0028.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.24.7e-1479127155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s++kGV   + +grW A+I++      ++r++lg+f  +eeAa+a++ a+++++g
  Kaladp0073s0028.1.p  79 SKFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDTAAQRFRG 127
                          79****9888.8*********3.....5*************************98 PP
2B397.39.5e-31206308194
                          EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                          f+kv tpsdv+k++rlv+pk++ae+h         +    +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL +gD v 
  Kaladp0073s0028.1.p 206 FEKVVTPSDVGKLNRLVIPKQHAEKHfplntspsaSDAASKGVLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLLAGDAVS 295
                          99*************************9999988855556999*********************************************** PP

                          EEE-SSSEE..EE CS
                   B3  82 Fkldgrsefelvv 94 
                          F++++  +++l++
  Kaladp0073s0028.1.p 296 FERSNGADRQLYI 308
                          **87666666665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    
MDLLQIVGST FKIGMNMDGS CIDESSATSD STSAAVDMVV PRKSATETTE KLTRMGSGAS  60
VITDSAIGVE AESRKLPSSK FKGVVPQPNG RWGAQIYEKH QRVWLGTFNE EEEAARAYDT  120
AAQRFRGRDA VTNFKPLAAE TVDRDAVESA FLNSRSKAEI VDMLRKHTYA EELEQSRRIV  180
GLDNGSGEVG GRAGCGHPVG PKELLFEKVV TPSDVGKLNR LVIPKQHAEK HFPLNTSPSA  240
SDAASKGVLL NFEDGGGKVW RFRYSYWNSS QSYVLTKGWS RFVKEKGLLA GDAVSFERSN  300
GADRQLYIDM KHKNGQLSDL QLLAHSTIRL FGVNIIKDPI CNIIMKHMNN PDEDNKRMRS  360
GNEEKDLFGF QCMKKQRASP RDIVAYL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-133RAV family protein