PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0062s0162.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HB-PHD

Protein Properties

Length: 1036aa MW: 111936 Da PI: 6.0475

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0062s0162.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.3	4.7e-12	653	703	2	52
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++R + + ++ L e+F+kn+yp ++ +e LA++lg++ +V WF N R Kaladp0062s0162.1.p 653 SSRNMLGEAATQKLAEAFQKNQYPERAVKENLANELGIPYPKVDKWFGNAR 703 6788888999***************************************99 PP
2	PHD	41.8	2.4e-14	281	336	1	51
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C +Cg+ +++++vlCd +C+++fH+ Cl+++l +e++p + wlC+ C++k Kaladp0062s0162.1.p 281 YCTICGSkdLSADNDIVLCDgECNRAFHQLCLKPPLLTEDIPPDdqGWLCPGCDCK 336 7****77677****56***************99999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1036 aa Download sequence
MGKSEDTSQA KPDEPMQENG FLNDEVEGTS SKVAPNLVGR SDTSDADATG QPTEDHNKSS 60 KSNGEGLSSL SPDEIKQIVA NFLGTVSADN SIKGLDGEVP ADHSINDYGF SKYKSRFSSG 120 KKKKTSAKLS RKKITGSDSQ RNRTLRSRGR SEVYVQNTDA ENAHSTPLAS CSTERRRKKK 180 KILRENSDDV FTKIRKQVRY ILNKVRYEQN LIDAYGGEGW KGLSLDKLKP ERELQRASSE 240 IIRCKLRLRD LFQRLDALCD EGSYPRSMFD SEGLLDTEDI YCTICGSKDL SADNDIVLCD 300 GECNRAFHQL CLKPPLLTED IPPDDQGWLC PGCDCKFDCT ELLNDSLGTD LSMKHNWTCV 360 FPEAAAAAAA AGANLQDEIL GLPSDDSGDN DFDPDHTDVD EKVEEYKSEE GGESGGEGST 420 SDESDFTSAS EDLGDFVNEG QLNGNPLDNS DEEEDDDYDP DAPDPDEQIK EESSSSDFTS 480 DSEDFVPEVD NVTSKTNGSS ELAMLETEQE SPAPGSKKRD IERLDYKKLY DETYGNASSD 540 SSDDEEWTEV GPSRKRKTKD QRVDSTLPSK NVEAAADKSD DEEEWADVGS SRKRKNKNRR 600 VDSALSSKNI EASLDDKQSA DEERKLQEAE HSTQKRSRKK LKSSAENGSA SKSSRNMLGE 660 AATQKLAEAF QKNQYPERAV KENLANELGI PYPKVDKWFG NARWSFNHPL HTRTVSKSDI 720 AKKSPSQATP GSKADITNNS SNSHPSQNLS DANATANDSP VKPSSPLKPS STRALANKSP 780 SQVISGRKAV INNNSSNSHP SQNLSNGKTT GNVSPVKTSA PLKPSSTQAV GKRGQSQNLP 840 SPKSHAAGTT SQVDASKSPP PQSSKRLSGR HQETVTSYFS KAEANKPSTI NTEGSADAVG 900 SSKLKATNPT PNSKQRGKKA VPSSEKEPKA PCAPAPNKAT TPAANLKQRG EKSVSSSEKV 960 PAAPSAPAPI VLAQKSPSLA AASRQNKSPT PKSRKTATKL LPSNQKSAIA SSMPAASTKA 1020 GGATEKRKVQ TRSKK*

Sequence ? help Back to Top

Protein Sequence Length: 1036 aa Download sequence

MGKSEDTSQA KPDEPMQENG FLNDEVEGTS SKVAPNLVGR SDTSDADATG QPTEDHNKSS  60
KSNGEGLSSL SPDEIKQIVA NFLGTVSADN SIKGLDGEVP ADHSINDYGF SKYKSRFSSG  120
KKKKTSAKLS RKKITGSDSQ RNRTLRSRGR SEVYVQNTDA ENAHSTPLAS CSTERRRKKK  180
KILRENSDDV FTKIRKQVRY ILNKVRYEQN LIDAYGGEGW KGLSLDKLKP ERELQRASSE  240
IIRCKLRLRD LFQRLDALCD EGSYPRSMFD SEGLLDTEDI YCTICGSKDL SADNDIVLCD  300
GECNRAFHQL CLKPPLLTED IPPDDQGWLC PGCDCKFDCT ELLNDSLGTD LSMKHNWTCV  360
FPEAAAAAAA AGANLQDEIL GLPSDDSGDN DFDPDHTDVD EKVEEYKSEE GGESGGEGST  420
SDESDFTSAS EDLGDFVNEG QLNGNPLDNS DEEEDDDYDP DAPDPDEQIK EESSSSDFTS  480
DSEDFVPEVD NVTSKTNGSS ELAMLETEQE SPAPGSKKRD IERLDYKKLY DETYGNASSD  540
SSDDEEWTEV GPSRKRKTKD QRVDSTLPSK NVEAAADKSD DEEEWADVGS SRKRKNKNRR  600
VDSALSSKNI EASLDDKQSA DEERKLQEAE HSTQKRSRKK LKSSAENGSA SKSSRNMLGE  660
AATQKLAEAF QKNQYPERAV KENLANELGI PYPKVDKWFG NARWSFNHPL HTRTVSKSDI  720
AKKSPSQATP GSKADITNNS SNSHPSQNLS DANATANDSP VKPSSPLKPS STRALANKSP  780
SQVISGRKAV INNNSSNSHP SQNLSNGKTT GNVSPVKTSA PLKPSSTQAV GKRGQSQNLP  840
SPKSHAAGTT SQVDASKSPP PQSSKRLSGR HQETVTSYFS KAEANKPSTI NTEGSADAVG  900
SSKLKATNPT PNSKQRGKKA VPSSEKEPKA PCAPAPNKAT TPAANLKQRG EKSVSSSEKV  960
PAAPSAPAPI VLAQKSPSLA AASRQNKSPT PKSRKTATKL LPSNQKSAIA SSMPAASTKA  1020
GGATEKRKVQ TRSKK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	175	181	RRRKKKK
2	176	182	RRRKKKK
3	553	558	SRKRKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	1e-81	HB-PHD family protein