PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0062s0041.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family RAV
Protein Properties Length: 360aa    MW: 39682.6 Da    PI: 9.7899
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0062s0041.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.28.4e-1372120155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s++kGV   + +grW A+I++      ++r++lg+f+ ++eAa+ ++ a+++++g
  Kaladp0062s0041.1.p  72 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFDEEDEAARVYDLAAQRFRG 120
                          689***9788.8*********3.....5**********99*************98 PP
2B397.77.3e-31194297193
                          EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                          f+k+ tpsdv+k++rlv+pk++ae+h          g++++++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++L +gD+v 
  Kaladp0062s0041.1.p 194 FEKAVTPSDVGKLNRLVIPKQHAEKHfqlqsrgspAGSSAKGVLLNFEDAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLHAGDVVR 283
                          89*****************************9999777789************************************************* PP

                          EEE-.SS.SEE..E CS
                   B3  82 Fkld.gr.sefelv 93 
                          F+ + g  ++++l+
  Kaladp0062s0041.1.p 284 FYKStGAaDRTQLH 297
                          *9443444555555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    
MDLNCTVDTG STATGEDSST SSSLIIISPT SPPLTPTAPK TTHVNPLSRM GSGASVVIDA  60
EAESSGRRLV SSRFKGVVPQ PNGRWGAQIY EKHQRVWLGT FDEEDEAARV YDLAAQRFRG  120
RDAVTNYEPL ATDEAGSVEY SFLTSHSKAE IVDMLRKHTY AEELEQRKRH SASQASRPDP  180
RLSLGSGLAR EPLFEKAVTP SDVGKLNRLV IPKQHAEKHF QLQSRGSPAG SSAKGVLLNF  240
EDAGGKVWRF RYSYWNSSQS YVLTKGWSRF VKEKNLHAGD VVRFYKSTGA ADRTQLHIDF  300
KSRTALMMIT ASQPSYATTA APNCAVVRLF GVNIVKSSDD NKRKMEMELL GFETCKSRR*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-121RAV family protein