PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0059s0317.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

CO-like

Protein Properties

Length: 407aa MW: 44501 Da PI: 7.0115

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0059s0317.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.8	1.7e-06	3	44	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r+C+ ++e++ +C++++ +lC +C + H+ H++ Kaladp0059s0317.1.p 3 RMCDFCGEQRSMVYCRSDSACLCLSCDRNVHSAnalsnrHSR 44 68*****************************65677777765 PP
2	zf-B_box	25.4	3e-08	46	89	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+++ +++++ C+d + lC++C ++H + H++++ Kaladp0059s0317.1.p 46 LLCERCMSQPAIVRCHDESASLCQNCDWSGHGNasvtstHQRQT 89 57*****************************6688888888766 PP
3	CCT	63.5	6.4e-22	349	392	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RYkeK+k+RkF+KkirY+sRK++A+ R+RvKGrFvk+ Kaladp0059s0317.1.p 349 RDNAVRRYKEKKKHRKFDKKIRYASRKERADVRKRVKGRFVKAG 392 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MGRMCDFCGE QRSMVYCRSD SACLCLSCDR NVHSANALSN RHSRTLLCER CMSQPAIVRC 60 HDESASLCQN CDWSGHGNAS VTSTHQRQTI NCYSGCPSAA ELSRIWSFVL DMASTGALDG 120 EKGAGSVAET CAGLTNLERK SSASLADASR IVELESKSAV LMPSSTMGAP KSTTLFKELP 180 TPPKQCCSIT EDIQLFDDDD NLFGDFSMAD ADLNLESYEE LFGYSQNFSE HLFENGGMAS 240 LFPERYIPEV GTSRQGPKAA KGPAAVRTNT MQPSCSNPMS VDSVVSCKTD PVAYPTRKDN 300 SGVTLSFSGM TNESSNGEYQ DCGVSPMVAI GEPPWCPPGL ENSLTSASRD NAVRRYKEKK 360 KHRKFDKKIR YASRKERADV RKRVKGRFVK AGEKYDYDPM CPTRSF*

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MGRMCDFCGE QRSMVYCRSD SACLCLSCDR NVHSANALSN RHSRTLLCER CMSQPAIVRC  60
HDESASLCQN CDWSGHGNAS VTSTHQRQTI NCYSGCPSAA ELSRIWSFVL DMASTGALDG  120
EKGAGSVAET CAGLTNLERK SSASLADASR IVELESKSAV LMPSSTMGAP KSTTLFKELP  180
TPPKQCCSIT EDIQLFDDDD NLFGDFSMAD ADLNLESYEE LFGYSQNFSE HLFENGGMAS  240
LFPERYIPEV GTSRQGPKAA KGPAAVRTNT MQPSCSNPMS VDSVVSCKTD PVAYPTRKDN  300
SGVTLSFSGM TNESSNGEYQ DCGVSPMVAI GEPPWCPPGL ENSLTSASRD NAVRRYKEKK  360
KHRKFDKKIR YASRKERADV RKRVKGRFVK AGEKYDYDPM CPTRSF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	361	370	KHRKFDKKIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-116	CO-like family protein