PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0055s0531.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 421aa MW: 46592 Da PI: 7.5004

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0055s0531.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53	7.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l++ ++++G g+W+++++ g+ R++k+c++rw +yl Kaladp0055s0531.1.p 14 KGLWSPEEDDKLLRHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	47.2	5.3e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eE+ ++v++++ lG++ W+ Ia+ ++ gRt++++k+ w++ Kaladp0055s0531.1.p 67 RGAFSQEEENIIVELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDDKLLRHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGAF SQEEENIIVE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQKG 120 IDPNTHKPIS EMEAEQKRSA TEAAAISLQA SYENNKNNMV SAAGSDEVIS MHLIDASDSH 180 NMNNAVFIDN NFLSSFEANS KFSHSMTQDF FVDRCGRSAT SCGGQPDMLG EGYLSLLAPL 240 SLTNTTQASN ISFNLGSRSS GSSPIPDDSQ FNNNLLPSMF PSISNSMILT NTTGARPCSV 300 ISDTDQSLGS FDWDQRQNGT NACSCLWEMA TAKSSQFEEA KWSAYLQNTS SSFGTLQSGN 360 SNLFSGGEMI KPEPVRYGSS GGASLLWHHQ MNQQQQHHSS PSDVFAKDLQ RLKMAFEQTF 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDDKLLRHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SQEEENIIVE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQKG  120
IDPNTHKPIS EMEAEQKRSA TEAAAISLQA SYENNKNNMV SAAGSDEVIS MHLIDASDSH  180
NMNNAVFIDN NFLSSFEANS KFSHSMTQDF FVDRCGRSAT SCGGQPDMLG EGYLSLLAPL  240
SLTNTTQASN ISFNLGSRSS GSSPIPDDSQ FNNNLLPSMF PSISNSMILT NTTGARPCSV  300
ISDTDQSLGS FDWDQRQNGT NACSCLWEMA TAKSSQFEEA KWSAYLQNTS SSFGTLQSGN  360
SNLFSGGEMI KPEPVRYGSS GGASLLWHHQ MNQQQQHHSS PSDVFAKDLQ RLKMAFEQTF  420
*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	LKKKLRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.3	2e-89	MYB family protein