PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0055s0239.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 274aa    MW: 30531.7 Da    PI: 9.1678
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0055s0239.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.8e-151461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd +l  +++ +G g+W++ ++  g+ R++k+c++rw +yl
  Kaladp0055s0239.1.p 14 KGAWTKEEDGRLMSYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                         79******************************99************97 PP
2Myb_DNA-binding57.92.3e-1867111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++T+eEdel+++++ +lG++ W+ Ia +++ gRt++++k++w+++
  Kaladp0055s0239.1.p  67 RGNFTEEEDELIIKLHSLLGNK-WSIIAGRLP-GRTDNEIKNYWNTH 111
                          89********************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MGRSPCCEKA HTNKGAWTKE EDGRLMSYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIK LHSLLGNKWS IIAGRLPGRT DNEIKNYWNT HIRRKLLNRG  120
IDPATHRSIN DPSTPERSTN TATTISFGAS NNKNMNAASR DQVEDQKSMA VRGMFGCKVE  180
RFPLQEQHGI PDLNLELKIS PPSCYQYQQQ EAVLKSGRNH SAAVCFACSL GLKSSNDCSC  240
GDYVSAGKNS AVVQHDFLGL KGGVLDYRSL EMK*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-107MYB family protein