PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0050s0289.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

RAV

Protein Properties

Length: 352aa MW: 38790.6 Da PI: 10.0455

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0050s0289.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	38.2	3.5e-12	73	121	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f ++eAa+ ++ a+++++g Kaladp0050s0289.1.p 73 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARVYDIAAQRFRG 121 689*9788.8*****3.....5******99***********98 PP
2	B3	100	1.4e-31	195	297	1	96
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ tpsdv+k++rlv+pk++ae+h + +++++ l +ed gr+W+++++y+++s++yvlt+GW++Fvk+++L++gD+v F+ Kaladp0050s0289.1.p 195 FEKAITPSDVGKLNRLVIPKQHAEKHfplqsgSPASTKGVLLNFEDAGGRVWRFRYSYWNSSQSYVLTRGWSRFVKEKNLRAGDVVSFYK 284 89*************************98633445899***********************************************6 PP -SS.SEE..EEEE CS B3 85 dgr.sefelvvkv 96 + ++++l++ + Kaladp0050s0289.1.p 285 STGaTDRQLHIDF 297 6444777777765 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MDLNCSDDMT STATKDASSS SASSSLIIAP APPLTLAALR VNPLCRMGSG ASVVIDTDNG 60 VEAESSGRKL ASSRFKGVVP QPNGRWGAQI YEKHQRVWLG TFNEEDEAAR VYDIAAQRFR 120 GRDAVTNFKP LKTDEACSAE YSFLTSRSKS EIVDMLRKHT YAEELEQSKR HSGSDTNKPD 180 PRSSPGSGPA REHLFEKAIT PSDVGKLNRL VIPKQHAEKH FPLQSGSPAS TKGVLLNFED 240 AGGRVWRFRY SYWNSSQSYV LTRGWSRFVK EKNLRAGDVV SFYKSTGATD RQLHIDFKSR 300 VGVIASASKP SPITPLDNIV RLFGVNIGKS SNERPREMEL LGFESCKRRR G*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MDLNCSDDMT STATKDASSS SASSSLIIAP APPLTLAALR VNPLCRMGSG ASVVIDTDNG  60
VEAESSGRKL ASSRFKGVVP QPNGRWGAQI YEKHQRVWLG TFNEEDEAAR VYDIAAQRFR  120
GRDAVTNFKP LKTDEACSAE YSFLTSRSKS EIVDMLRKHT YAEELEQSKR HSGSDTNKPD  180
PRSSPGSGPA REHLFEKAIT PSDVGKLNRL VIPKQHAEKH FPLQSGSPAS TKGVLLNFED  240
AGGRVWRFRY SYWNSSQSYV LTRGWSRFVK EKNLRAGDVV SFYKSTGATD RQLHIDFKSR  300
VGVIASASKP SPITPLDNIV RLFGVNIGKS SNERPREMEL LGFESCKRRR G*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	1e-133	RAV family protein