PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0048s0001.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 393aa MW: 43936.8 Da PI: 6.8216

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0048s0001.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.6	9.2e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d++ + G+g +W t +++ g++R++k+c++rw++yl Kaladp0048s0001.1.p 14 KGPWSPEEDSKLKDYIDKNGTGgNWITLPHKAGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	35.7	1.9e-11	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd + + + G++ W+ Ia+ ++ gRt++++k++w++ Kaladp0048s0001.1.p 69 GEFSVEEDRVICSLYATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDSKLKDYID KNGTGGNWIT LPHKAGLRRC GKSCRLRWLN 60 YLRPNIKHGE FSVEEDRVIC SLYATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMAF 120 AAAAAATSSI TPDKPAPSPS IYPTSSQMTS LYSYNSYYSA NPSKKPLMDD NQQTFSCHRM 180 TNPTSAATTS VGTSCCLETG LSLFQTQMQH QNQQYYQPLM LGSDHQQTSC SSNTSDNGGT 240 SCGNKHDSYQ NNVVVPSGFE FDDELHLDNQ NNKQRHGLML HGYDEINNDN LFLSHQFDHQ 300 NSIINSSTDN DAPAALMDFY VDDAAVGGGD KQQQLNVNMN NGRSFINNGG DNNHQVIINS 360 KITSLQDHQQ AMMMKEKDER MMMYYDFNTN YC*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDSKLKDYID KNGTGGNWIT LPHKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSVEEDRVIC SLYATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMAF  120
AAAAAATSSI TPDKPAPSPS IYPTSSQMTS LYSYNSYYSA NPSKKPLMDD NQQTFSCHRM  180
TNPTSAATTS VGTSCCLETG LSLFQTQMQH QNQQYYQPLM LGSDHQQTSC SSNTSDNGGT  240
SCGNKHDSYQ NNVVVPSGFE FDDELHLDNQ NNKQRHGLML HGYDEINNDN LFLSHQFDHQ  300
NSIINSSTDN DAPAALMDFY VDDAAVGGGD KQQQLNVNMN NGRSFINNGG DNNHQVIINS  360
KITSLQDHQQ AMMMKEKDER MMMYYDFNTN YC*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	8e-77	MYB family protein