PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0039s0496.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

CO-like

Protein Properties

Length: 439aa MW: 47763.3 Da PI: 5.9958

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0039s0496.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.5	1.5e-09	17	60	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC++C ++ H+ H++v Kaladp0039s0496.1.p 17 ARACDSCIRKRARWYCAADDAFLCQSCDSSVHSAnplarrHERV 60 578*****************************667888888876 PP
2	CCT	67.4	4e-23	379	421	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+ Kaladp0039s0496.1.p 379 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 421 9****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MTPDVKKVAN VVGGKTARAC DSCIRKRARW YCAADDAFLC QSCDSSVHSA NPLARRHERV 60 RLKTASFASV HGESGGHNKS SNRVPTWHSR KPRTPRGKKG GSFRSPKSDE VVRNPFYLVP 120 EAMSDDTTSF DESDGQLLFG RVPVFDSFAA ELCSPPHEAD AMEAFTDTGP ENVKASGGQR 180 REDFDEMKGF VGNFCNDLGF LPSEKDLEEF AADVEKLLGT GLDDESFGID GLGLVGCNVD 240 VEGSFNCSVR GGGGGRVKDE EEEAEEIDMT REPFVLSFDY DEEGNGASEA AEGGAVGGGD 300 VDVKVAKKMK ILLKLDYEGI VSAWDGSSPW TTGTRPEVDP NDCWPTCMGA CGIESHLQRL 360 GDPATGVNGR MGMLGDGGRE ARVSRYREKR RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK 420 RCSSSFPAGS SNNVSLFT*

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MTPDVKKVAN VVGGKTARAC DSCIRKRARW YCAADDAFLC QSCDSSVHSA NPLARRHERV  60
RLKTASFASV HGESGGHNKS SNRVPTWHSR KPRTPRGKKG GSFRSPKSDE VVRNPFYLVP  120
EAMSDDTTSF DESDGQLLFG RVPVFDSFAA ELCSPPHEAD AMEAFTDTGP ENVKASGGQR  180
REDFDEMKGF VGNFCNDLGF LPSEKDLEEF AADVEKLLGT GLDDESFGID GLGLVGCNVD  240
VEGSFNCSVR GGGGGRVKDE EEEAEEIDMT REPFVLSFDY DEEGNGASEA AEGGAVGGGD  300
VDVKVAKKMK ILLKLDYEGI VSAWDGSSPW TTGTRPEVDP NDCWPTCMGA CGIESHLQRL  360
GDPATGVNGR MGMLGDGGRE ARVSRYREKR RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK  420
RCSSSFPAGS SNNVSLFT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	390	406	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	8e-90	CO-like family protein