PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0024s0603.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 407aa MW: 45264.5 Da PI: 9.8222

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0024s0603.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.7e-06	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Kaladp0024s0603.1.p 55 YVCEICNQGFQRDQNLQMHRRRH 77 9*********************9 PP
2	zf-C2H2	14.9	7.5e-05	133	154	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C +C+k + +s++k H++t+ Kaladp0024s0603.1.p 133 SCLKCSKAYAVQSDYKAHLKTC 154 8*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MKMIPSCSSG NPDHPNIITT ANFNSKRKRR PAGTPDPDAE VVSLSPKTLL ESDRYVCEIC 60 NQGFQRDQNL QMHRRRHKVP WKLLKREKAV VRKRVFVCPE ASCLHHDPCH ALGDLVGIKK 120 HFRRKHSNHK QWSCLKCSKA YAVQSDYKAH LKTCGSRGHS CNCGRVFSRV ESFIEHQDTC 180 NLGKLQSHNQ NPTLLLPPAP APAPASACLS QTASSPSPST DTNYSTTPIW PISMTTTTPT 240 SSQKHTAISS GDRVDLYHNL DLQLSTSAKP TNQPPVKLSP ITNSNDNYSS THQLQISIGS 300 TTDLCDKSET NMETHQTVSI RVTNNIMEVE VMTLASVAER KQAKRLIVLA ERELAHARRI 360 RQQAQSELQK AKTLRDNAVK QITSTLLEIT CHSCKIQFQL GRPANA*

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MKMIPSCSSG NPDHPNIITT ANFNSKRKRR PAGTPDPDAE VVSLSPKTLL ESDRYVCEIC  60
NQGFQRDQNL QMHRRRHKVP WKLLKREKAV VRKRVFVCPE ASCLHHDPCH ALGDLVGIKK  120
HFRRKHSNHK QWSCLKCSKA YAVQSDYKAH LKTCGSRGHS CNCGRVFSRV ESFIEHQDTC  180
NLGKLQSHNQ NPTLLLPPAP APAPASACLS QTASSPSPST DTNYSTTPIW PISMTTTTPT  240
SSQKHTAISS GDRVDLYHNL DLQLSTSAKP TNQPPVKLSP ITNSNDNYSS THQLQISIGS  300
TTDLCDKSET NMETHQTVSI RVTNNIMEVE VMTLASVAER KQAKRLIVLA ERELAHARRI  360
RQQAQSELQK AKTLRDNAVK QITSTLLEIT CHSCKIQFQL GRPANA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	31	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-126	C2H2 family protein