PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0024s0285.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 545aa MW: 60075.7 Da PI: 4.9852

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0024s0285.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.6e-17	36	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+d+vk++G g+W+++ ++ g+ R++k+c++rw ++l Kaladp0024s0285.1.p 36 KGPWTSAEDAILIDYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 83 79******************************************9986 PP
2	Myb_DNA-binding	52.4	1.2e-16	89	132	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l++++++++G++ W++ a++++ gRt++++k++w++ Kaladp0024s0285.1.p 89 KGAFTEEEERLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 132 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MSIDTEDGPL SNEELESQLI GDESSRGITS GIVLKKGPWT SAEDAILIDY VKKHGEGNWN 60 AVQKHSGLFR CGKSCRLRWA NHLRPNLKKG AFTEEEERLI IELHAKMGNK WARMAAHLPG 120 RTDNEIKNYW NTRIKRRQRA GLPLYPPEAC LQALLESQSQ DPSRVNSRGT GYNEPNMYNI 180 SDVMFHSMPA ARGSLPYFPE PPGMSSDNVL LEALALTRRT NFTSSQPPKR SCGLRSHVCG 240 SDVIVKKELR SFEPVQDDPK VNESLELFFP DDRDNHLSLG ETQDSHSFVN GNFSTPKPAC 300 EAVKSELPSF QYPDTYSSNW DASYSASPLL DPIDSNIHGE TPNGTVHSEC SSPRNSGLLD 360 ALLYEARAIS GVKNQLSKKS SHSSAVTLSE SAGESGPKFC ETEIGNYSEP MSPFGSTTSI 420 YGGSELTAAN GTLLDSHPFK ETYFGCKLKS EPADNVSNPV EENSPNRFDF SEPGLPFYSD 480 WLEQESGFIM EEASLEEGAG EAFVGNDSIN DFRYMGSALT GQGWGNCSYV WKSMPTVRQV 540 CKFP*

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MSIDTEDGPL SNEELESQLI GDESSRGITS GIVLKKGPWT SAEDAILIDY VKKHGEGNWN  60
AVQKHSGLFR CGKSCRLRWA NHLRPNLKKG AFTEEEERLI IELHAKMGNK WARMAAHLPG  120
RTDNEIKNYW NTRIKRRQRA GLPLYPPEAC LQALLESQSQ DPSRVNSRGT GYNEPNMYNI  180
SDVMFHSMPA ARGSLPYFPE PPGMSSDNVL LEALALTRRT NFTSSQPPKR SCGLRSHVCG  240
SDVIVKKELR SFEPVQDDPK VNESLELFFP DDRDNHLSLG ETQDSHSFVN GNFSTPKPAC  300
EAVKSELPSF QYPDTYSSNW DASYSASPLL DPIDSNIHGE TPNGTVHSEC SSPRNSGLLD  360
ALLYEARAIS GVKNQLSKKS SHSSAVTLSE SAGESGPKFC ETEIGNYSEP MSPFGSTTSI  420
YGGSELTAAN GTLLDSHPFK ETYFGCKLKS EPADNVSNPV EENSPNRFDF SEPGLPFYSD  480
WLEQESGFIM EEASLEEGAG EAFVGNDSIN DFRYMGSALT GQGWGNCSYV WKSMPTVRQV  540
CKFP*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11440.1	1e-104	MYB family protein