PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0024s0186.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

RAV

Protein Properties

Length: 385aa MW: 42049.5 Da PI: 9.5522

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0024s0186.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.5	1.9e-14	70	118	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f +eeAa+a++ a+++++g Kaladp0024s0186.1.p 70 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDTAAQRFRG 118 89**9888.8*****3.....5***********************98 PP
2	B3	98.4	4.4e-31	197	300	1	95
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+kv tpsdv+k++rlv+pk++ae+h ++++ l +ed g++W+++++y+++s++yvltkGW++Fvk++gL +gD+v Kaladp0024s0186.1.p 197 FEKVVTPSDVGKLNRLVIPKQHAEKHfplnsssaaLAAAARGVLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLLAGDVVS 286 99***********************9988877733345999******************************************* PP EEE-SSSEE..EEE CS B3 82 Fkldgrsefelvvk 95 F++++ +++l++ Kaladp0024s0186.1.p 287 FERSNGADGQLYID 300 887677777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MDGSLTDESS ATSDSTSMAV DVIGSMKSTM MTEKLSRMGS GASVIIDSVM AGAVVGAKGV 60 EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEEEAARAYD TAAQRFRGRD 120 AVTNFKPLAT ETVDRDAVES AFLNSRSKAE IVDMLRKHTY ADELEQSRRS IGLDNGSDGV 180 GRVCGGQHPV GAKLHLFEKV VTPSDVGKLN RLVIPKQHAE KHFPLNSSSA ALAAAARGVL 240 LNFEDGGGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKGLL AGDVVSFERS NGADGQLYID 300 LQPKSRHNES ESTARVLSDS LVPGHSTIRL FGVNIIKDPL CNIILTKNPN NNKRMRSGHE 360 DNDLFAHQCM KKQRVSAPAI VAYL*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MDGSLTDESS ATSDSTSMAV DVIGSMKSTM MTEKLSRMGS GASVIIDSVM AGAVVGAKGV  60
EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEEEAARAYD TAAQRFRGRD  120
AVTNFKPLAT ETVDRDAVES AFLNSRSKAE IVDMLRKHTY ADELEQSRRS IGLDNGSDGV  180
GRVCGGQHPV GAKLHLFEKV VTPSDVGKLN RLVIPKQHAE KHFPLNSSSA ALAAAARGVL  240
LNFEDGGGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKGLL AGDVVSFERS NGADGQLYID  300
LQPKSRHNES ESTARVLSDS LVPGHSTIRL FGVNIIKDPL CNIILTKNPN NNKRMRSGHE  360
DNDLFAHQCM KKQRVSAPAI VAYL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	1e-124	RAV family protein