PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0017s0020.3.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SBP

Protein Properties

Length: 441aa MW: 48930.5 Da PI: 6.5013

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0017s0020.3.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	124.1	6e-39	148	224	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gC++dls+ k+y++rh+vC v +k ++v+v+g+++rfCqqCsrfh l+efDe+krsCr+rLa+hn+rrrk++ Kaladp0017s0020.3.p 148 TCQVQGCDMDLSSSKDYYKRHRVCPVDTKKAQVTVNGIQKRFCQQCSRFHLLDEFDEDKRSCRKRLAGHNRRRRKPR 224 6**************************************************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MEFWGCDSEG YDLFSEDEEL DLGAEEPDRS GNMLFEFDLD SPFGLEEDPI IMDEQVMERY 60 LQMESGLSDL IAMSNPAAEN LGAGDGIFSG DDANVASPDC GLSSFSIPGG DGSSPDDISN 120 KISDVSNANS SLPEKRAHSE LSSSSKVTCQ VQGCDMDLSS SKDYYKRHRV CPVDTKKAQV 180 TVNGIQKRFC QQCSRFHLLD EFDEDKRSCR KRLAGHNRRR RKPRFENRIS RPHRFQPYQG 240 TRPHGQAAPP RRHLMSDLLP RRILFPDIYE QINGLRLQGG GSVYGPTPSD INTSRSHCLG 300 PEYYATPVRP SAVRNSSRVS DPCYALSLLS NQPQVSSPYF ASPVIVHGHN IFNRVSFPSP 360 HMLHPAGVNL CQIAPRMVPG YASPVGFDIS ENHHRRPLCS NCSNCSNCSG GRQPPEHAST 420 VDLRQLSFNL TRVEHQRNVP *

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MEFWGCDSEG YDLFSEDEEL DLGAEEPDRS GNMLFEFDLD SPFGLEEDPI IMDEQVMERY  60
LQMESGLSDL IAMSNPAAEN LGAGDGIFSG DDANVASPDC GLSSFSIPGG DGSSPDDISN  120
KISDVSNANS SLPEKRAHSE LSSSSKVTCQ VQGCDMDLSS SKDYYKRHRV CPVDTKKAQV  180
TVNGIQKRFC QQCSRFHLLD EFDEDKRSCR KRLAGHNRRR RKPRFENRIS RPHRFQPYQG  240
TRPHGQAAPP RRHLMSDLLP RRILFPDIYE QINGLRLQGG GSVYGPTPSD INTSRSHCLG  300
PEYYATPVRP SAVRNSSRVS DPCYALSLLS NQPQVSSPYF ASPVIVHGHN IFNRVSFPSP  360
HMLHPAGVNL CQIAPRMVPG YASPVGFDIS ENHHRRPLCS NCSNCSNCSG GRQPPEHAST  420
VDLRQLSFNL TRVEHQRNVP *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	206	223	KRSCRKRLAGHNRRRRKP
2	218	224	RRRRKPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	1e-35	SBP family protein