PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0008s0291.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 602aa MW: 65081.6 Da PI: 6.6619

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0008s0291.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.00019	20	42	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F++ L H+r+H Kaladp0008s0291.1.p 20 HVCTLCGKGFRSGKALGGHMRVH 42 79*******************99 PP
2	zf-C2H2	11.6	0.00083	97	115	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 Cp+C + F+++ L H+r Kaladp0008s0291.1.p 97 CPICRRDFPSNKALFGHMR 115 ******************8 PP
3	zf-C2H2	11.7	0.00081	408	430	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F+++ L H ++H Kaladp0008s0291.1.p 408 YKCTTCSKTFTSHQALGGHKSSH 430 9***************9999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence
MPERSCESDS MRDKEVEEEH VCTLCGKGFR SGKALGGHMR VHAQRHRSDQ LKTSVVDGAA 60 ADGSCDMDVD EEEDEDDEVK RSCDELQMKD GGGKPICPIC RRDFPSNKAL FGHMRCHPER 120 KWRGIQPPVY SSSSTVSDVQ AHSSSSSHKS DHNDGDPFKS EVTDLEKDLL NFGWAAKARR 180 GREGTVKSIA PEQAAGVQNL ILLSRGGVDV KSRNKAEVGA EIKSKPLPAG PAIRDSTNFT 240 RKLKLRGAEV ESRGRVDHGS QKRRRKKRKT SQVLTTEEVS GLTNSGKKSK LADEEVEGSH 300 DDGTQDLMIV ESNPLHQLSG RRPPMISATE AGADVMPLEK VDASPHGYNA AELMQADLIE 360 TKKTQKVRKY LMISDLKPMS ANLPHSSPVN PPPLHQDINT EVSDNERYKC TTCSKTFTSH 420 QALGGHKSSH NKLRNPQVFR TDLPRPDSFT TQGGGSGNVD AGASHISGLI MAAAASAATP 480 VHPMHQCNVC FKIYPTGQAL GGHKRLHCSL TTNKTLPLPP PSIVIQEPAE AAASFHPSAP 540 PLAQASDNDH GVVGRFDLNE LPAVEDEDDQ HAAVIQPVDN IAAGDDKDAH EPGDSPAALD 600 Y*

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence

MPERSCESDS MRDKEVEEEH VCTLCGKGFR SGKALGGHMR VHAQRHRSDQ LKTSVVDGAA  60
ADGSCDMDVD EEEDEDDEVK RSCDELQMKD GGGKPICPIC RRDFPSNKAL FGHMRCHPER  120
KWRGIQPPVY SSSSTVSDVQ AHSSSSSHKS DHNDGDPFKS EVTDLEKDLL NFGWAAKARR  180
GREGTVKSIA PEQAAGVQNL ILLSRGGVDV KSRNKAEVGA EIKSKPLPAG PAIRDSTNFT  240
RKLKLRGAEV ESRGRVDHGS QKRRRKKRKT SQVLTTEEVS GLTNSGKKSK LADEEVEGSH  300
DDGTQDLMIV ESNPLHQLSG RRPPMISATE AGADVMPLEK VDASPHGYNA AELMQADLIE  360
TKKTQKVRKY LMISDLKPMS ANLPHSSPVN PPPLHQDINT EVSDNERYKC TTCSKTFTSH  420
QALGGHKSSH NKLRNPQVFR TDLPRPDSFT TQGGGSGNVD AGASHISGLI MAAAASAATP  480
VHPMHQCNVC FKIYPTGQAL GGHKRLHCSL TTNKTLPLPP PSIVIQEPAE AAASFHPSAP  540
PLAQASDNDH GVVGRFDLNE LPAVEDEDDQ HAAVIQPVDN IAAGDDKDAH EPGDSPAALD  600
Y*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	261	268	QKRRRKKR
2	261	269	QKRRRKKRK
3	262	268	KRRRKKR
4	262	290	KRRRKKRKTSQVLTTEEVSGLTNSGKKSK
5	263	269	KRRRKKR
6	263	291	KRRRKKRKTSQVLTTEEVSGLTNSGKKSK
7	263	268	RRRKKR
8	263	269	RRRKKRK
9	264	292	KRRRKKRKTSQVLTTEEVSGLTNSGKKSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	9e-18	C2H2 family protein