PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0002s0065.4.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 345aa MW: 38952.1 Da PI: 7.2503

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0002s0065.4.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.3	5.6e-08	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C+yG+rC++ H+ Kaladp0002s0065.4.p 34 VCTFYQK-GNCSYGSRCRYEHV 54 6****.*********997 PP
2	zf-CCCH	21.5	4e-07	125	147	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++Gd+C+ +Hg Kaladp0002s0065.4.p 125 RAICS-FAAAGSCPRGDNCPHIHG 147 78999.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MSRRILCKFF MHGACFKGEH CEFSHDWNDP ENNVCTFYQK GNCSYGSRCR YEHVRLSRPQ 60 TYEVPSSASF HQPLLSEPGS VADPSQFTNN EATVSVPAWS QVPAQISLYD NEDFVDSRIL 120 DPADRAICSF AAAGSCPRGD NCPHIHGDLC PTCGKHCLHP FRLEEREEHM KNCEKKQKHL 180 QALTKSQDIE CSVCLDRVLL KPTPAERKFG LLSECDHPFC ISCIRNWRSN SPSSGMDVNS 240 ALRACPICRK LSYFVIPSVI WYSSKEEKQE IVDNYKAKLK SIDCRHFDFG NGSCPFGTSC 300 FYKHAYRDGS LEEVALRHLG AEDGITVIAK NIRLSDFLAN LNMR*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MSRRILCKFF MHGACFKGEH CEFSHDWNDP ENNVCTFYQK GNCSYGSRCR YEHVRLSRPQ  60
TYEVPSSASF HQPLLSEPGS VADPSQFTNN EATVSVPAWS QVPAQISLYD NEDFVDSRIL  120
DPADRAICSF AAAGSCPRGD NCPHIHGDLC PTCGKHCLHP FRLEEREEHM KNCEKKQKHL  180
QALTKSQDIE CSVCLDRVLL KPTPAERKFG LLSECDHPFC ISCIRNWRSN SPSSGMDVNS  240
ALRACPICRK LSYFVIPSVI WYSSKEEKQE IVDNYKAKLK SIDCRHFDFG NGSCPFGTSC  300
FYKHAYRDGS LEEVALRHLG AEDGITVIAK NIRLSDFLAN LNMR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-161	C3H family protein