PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0002s0065.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C3H | ||||||||
Protein Properties | Length: 361aa MW: 40869.3 Da PI: 7.2561 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.2 | 5.9e-08 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C+yG+rC++ H+ Kaladp0002s0065.1.p 34 VCTFYQK-GNCSYGSRCRYEHV 54 6******.***********997 PP | |||||||
2 | zf-CCCH | 21.5 | 4.2e-07 | 125 | 147 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++Gd+C+ +Hg Kaladp0002s0065.1.p 125 RAICS-FAAAGSCPRGDNCPHIHG 147 78999.**************9998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence |
MSRRILCKFF MHGACFKGEH CEFSHDWNDP ENNVCTFYQK GNCSYGSRCR YEHVRLSRPQ 60 TYEVPSSASF HQPLLSEPGS VADPSQFTNN EATVSVPAWS QVPAQISLYD NEDFVDSRIL 120 DPADRAICSF AAAGSCPRGD NCPHIHGDLC PTCGKHCLHP FRLEEREEHM KNCEKKQKHL 180 QALTKSQDIE CSVCLDRVLL KPTPAERKFG LLSECDHPFC ISCIRNWRSN SPSSGMDVNS 240 ALRACPICRK LSYFVIPSVI WYSSKEEKQE IVDNYKAKLK SIDCRHFDFG NGSCPFGTSC 300 FYKHAYRDGS LEEVALRHLG AEDGITVIAK NIRSTFRFSS ELHNFFVRIL FCENLSSLCI 360 * |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.1 | 1e-157 | C3H family protein |