PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019200522.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 373aa MW: 39498.2 Da PI: 5.2644

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019200522.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.5	3.5e-36	88	183	5	98
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.kaaksaaks 97 k++++++hTkv+gR+RRvR++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ +++ + + ++ + + ++a+k+ XP_019200522.1 88 KRSSKDRHTKVEGRGRRVRMPAACAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVsVNGELKIPTTSPATEnEGDSTATKR 182 899**********************************************************8877744431122211111111111111111122 PP TCP 98 k 98 + XP_019200522.1 183 R 183 2 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MASIDNRPQN FDVVAADEEV NSPADPLLGD SNEYTITAVG GPASEIAAAG SSDSVPLLKE 60 EPEENDLQVA LPLGGHMQVR TLEKSLPKRS SKDRHTKVEG RGRRVRMPAA CAARIFQLTR 120 ELGHKSDGET IRWLLERAEP AIIEATGTGT VPAIAVSVNG ELKIPTTSPA TENEGDSTAT 180 KRRRKRGGNS EFFDVNEPSN FAPVSPITAQ GLVPVWTVGS ANGVVPTTAV PSGAFLMLPQ 240 PPSAAGPSSQ PQAQLWAIPA TATPVFSVPG RPISNFVSAM QPGVCFPQAR MTSSLSNGGD 300 NSGKEVSTMA PSCSSTSTTT AATATTQMLR DFSLQIYDKK ELQFMDASGS PSNDHPQKPP 360 PQTPNQREEM TRQ

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MASIDNRPQN FDVVAADEEV NSPADPLLGD SNEYTITAVG GPASEIAAAG SSDSVPLLKE  60
EPEENDLQVA LPLGGHMQVR TLEKSLPKRS SKDRHTKVEG RGRRVRMPAA CAARIFQLTR  120
ELGHKSDGET IRWLLERAEP AIIEATGTGT VPAIAVSVNG ELKIPTTSPA TENEGDSTAT  180
KRRRKRGGNS EFFDVNEPSN FAPVSPITAQ GLVPVWTVGS ANGVVPTTAV PSGAFLMLPQ  240
PPSAAGPSSQ PQAQLWAIPA TATPVFSVPG RPISNFVSAM QPGVCFPQAR MTSSLSNGGD  300
NSGKEVSTMA PSCSSTSTTT AATATTQMLR DFSLQIYDKK ELQFMDASGS PSNDHPQKPP  360
PQTPNQREEM TRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	2e-67	TCP family protein