PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019200415.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRF

Protein Properties

Length: 533aa MW: 56419.3 Da PI: 6.372

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019200415.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.4	1.2e-23	205	248	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrC+RtDGKkWRCs++v +++k+CErHlhrgr rsrk++e+ XP_019200415.1 205 LEPGRCKRTDGKKWRCSKEVAPNQKYCERHLHRGRPRSRKPVED 248 69***************************************997 PP
2	QLQ	52.9	1.1e-18	141	174	2	35
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 +FT aQ+ +L++Q+++yKy++a++PvPp+Ll+++ XP_019200415.1 141 PFTCAQWKELERQAMVYKYMMASLPVPPDLLLPL 174 8*******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MENGAGGGGV NGFGVPDKET ASAGGAGNGN AVVGSYGLGE NNIMMGRHVH HHHHHGFDGG 60 GSGGGGAGPT SGANENSIYM YGDDVATAPP HTNSSVPPFT VGGGAAAAAV AVRLSQAFNC 120 SNTAPLRPFK SPGMATSLGF PFTCAQWKEL ERQAMVYKYM MASLPVPPDL LLPLPTDAYN 180 AAPPSFHTQT GGSSVLGFSG KNRDLEPGRC KRTDGKKWRC SKEVAPNQKY CERHLHRGRP 240 RSRKPVEDHN NTKKTRLQQP VLESPSMVVS QPANPAPSQL LASSSSSDNK QNEGPQCLDS 300 RMDHSFSISP FNESHRSLDW EMAAMGGGGT EEQLQQLMAF ESNVYRDNAQ ILQQMSLFHC 360 KDYYGECNLY FNPDLGSLNK EFINAWANGS IASNTNTNNT DTGSCAYALS LAMAAGNTLD 420 SEMGVEGGNA GNCDEEDNTM CSNLTLRSPV SWVPFASGGP LAEVLKPSQQ QHHHHPSSSS 480 YISNGDSISP AGTTVSSPSG VLQKTNLFSQ SDGSVCNSPT VAASELVPFQ WLS

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MENGAGGGGV NGFGVPDKET ASAGGAGNGN AVVGSYGLGE NNIMMGRHVH HHHHHGFDGG  60
GSGGGGAGPT SGANENSIYM YGDDVATAPP HTNSSVPPFT VGGGAAAAAV AVRLSQAFNC  120
SNTAPLRPFK SPGMATSLGF PFTCAQWKEL ERQAMVYKYM MASLPVPPDL LLPLPTDAYN  180
AAPPSFHTQT GGSSVLGFSG KNRDLEPGRC KRTDGKKWRC SKEVAPNQKY CERHLHRGRP  240
RSRKPVEDHN NTKKTRLQQP VLESPSMVVS QPANPAPSQL LASSSSSDNK QNEGPQCLDS  300
RMDHSFSISP FNESHRSLDW EMAAMGGGGT EEQLQQLMAF ESNVYRDNAQ ILQQMSLFHC  360
KDYYGECNLY FNPDLGSLNK EFINAWANGS IASNTNTNNT DTGSCAYALS LAMAAGNTLD  420
SEMGVEGGNA GNCDEEDNTM CSNLTLRSPV SWVPFASGGP LAEVLKPSQQ QHHHHPSSSS  480
YISNGDSISP AGTTVSSPSG VLQKTNLFSQ SDGSVCNSPT VAASELVPFQ WLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	2e-31	GRF family protein