PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019200237.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARR-B

Protein Properties

Length: 436aa MW: 49858.2 Da PI: 5.9271

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019200237.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	66.7	3.9e-21	208	258	3	54
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 + +Wt+eLH++F++av+qL G+ + Pk+i e mkv gLt+e+v+SHLQ+ R XP_019200237.1 208 KFKWTEELHAKFIDAVNQL-GEGNCYPKEIWEKMKVRGLTREKVASHLQRCR 258 789**************.9**************************988 PP
2	Myb_DNA-binding	35.7	1.9e-11	210	257	3	47
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqky 47 +WT+e++ +++dav+qlG g +k I ++m g+t++ + s++q XP_019200237.1 210 KWTEELHAKFIDAVNQLGEGncYPKEIWEKMKvRGLTREKVASHLQRC 257 7*****************99999999999999*********975 PP
3	Response_reg	23.1	3.6e-09	48	147	11	107
HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT..SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS CS Response_reg 11 rellrqalekegyeevaeaddgeealellkekd..pDlillDiempg..mdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKp 101 + ++++l++ y ev+++++++ al l++ + +D+++ +p+ ++ l + i+++ ++i +++ +e a a++ G+ +l+Kp XP_019200237.1 48 TSMIAEILKQFSY-EVTVVESASRALSRLCNGEekFDVLMANFYQPDkkINVKLLQEAIKRKLLVVQINDEKDENGDEVARSAIEQGVFLYLEKP 141 57899******.***********766666*******99899999999999977666666666666699*************** PP --HHHH CS Response_reg 102 fdpeel 107 f+ + l XP_019200237.1 142 FPVDML 147 *99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MGEFGGFCHS FSQVVTDDFQ PPRRMHDVHV LIVEHRVNFV ANAKEFGTSM IAEILKQFSY 60 EVTVVESASR ALSRLCNGEE KFDVLMANFY QPDKKINVKL LQEAIKRKLL VVQINDEKDE 120 NGDEVARSAI EQGVFLYLEK PFPVDMLKYL WQHVYRERRL MNHSSQALDI SMAAETLING 180 QNNIVFTDNQ TSTDSNNINH LPRRRGAKFK WTEELHAKFI DAVNQLGEGN CYPKEIWEKM 240 KVRGLTREKV ASHLQRCRDN KWRPVEEHGN RRRSRTMQFS SSQPRRPRHK KFGFMPAVEE 300 TNSNGNMPPQ EQIIAAANDE ILSQNGGNNN ELGSSVTVST NFVTDTDVRV PPQTVQSSAD 360 IIVHDRRLLE DVQTHPVVTN SLNVDEAAVV NSSPIPWQVV GEPEFDELLD IPEEMLPWIF 420 FGGQQPDFPW QPTLSS

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MGEFGGFCHS FSQVVTDDFQ PPRRMHDVHV LIVEHRVNFV ANAKEFGTSM IAEILKQFSY  60
EVTVVESASR ALSRLCNGEE KFDVLMANFY QPDKKINVKL LQEAIKRKLL VVQINDEKDE  120
NGDEVARSAI EQGVFLYLEK PFPVDMLKYL WQHVYRERRL MNHSSQALDI SMAAETLING  180
QNNIVFTDNQ TSTDSNNINH LPRRRGAKFK WTEELHAKFI DAVNQLGEGN CYPKEIWEKM  240
KVRGLTREKV ASHLQRCRDN KWRPVEEHGN RRRSRTMQFS SSQPRRPRHK KFGFMPAVEE  300
TNSNGNMPPQ EQIIAAANDE ILSQNGGNNN ELGSSVTVST NFVTDTDVRV PPQTVQSSAD  360
IIVHDRRLLE DVQTHPVVTN SLNVDEAAVV NSSPIPWQVV GEPEFDELLD IPEEMLPWIF  420
FGGQQPDFPW QPTLSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	2e-21	ARR-B family protein