PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019200236.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 362aa MW: 41240.3 Da PI: 6.0558

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019200236.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	69.6	4.9e-22	187	238	2	54
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 p+ +Wt+eLH++F++av+qL G+ + Pk+i e+mkv+gLt+e+v+SHLQ+ R XP_019200236.1 187 PKFKWTEELHAKFLDAVNQL-GAGNCFPKEIWEMMKVPGLTREKVASHLQRCR 238 789***************.999************************988 PP
2	Myb_DNA-binding	37	7.7e-12	190	237	3	47
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqky 47 +WT+e++ +++dav+qlG g +k I ++m g+t++ + s++q XP_019200236.1 190 KWTEELHAKFLDAVNQLGAGncFPKEIWEMMKvPGLTREKVASHLQRC 237 7********************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MGEIGGFCHS FPQVVTDDFQ PPRLMHDVHV LLVEHRVNFV VNAKELGTSM IAEILKQFSY 60 EVTVVESASC ALSRLYNGTE KFDVLMVNFY LPEISDEEDE NGDEVARSAI EQGVFLYLEK 120 PFPVDMLKYL WQHVYRERRL MNHSSQALDI SMVAETLING ENNIVFTDNQ TATDSNNINH 180 LPRRRGPKFK WTEELHAKFL DAVNQLGAGN CFPKEIWEMM KVPGLTREKV ASHLQRCRDN 240 KWRPLEEHRN RRRSRTMQFS SQPRRPRGQK FGFMPSVEET NNNGNIPPQE KNIAAANDGT 300 SSQNGDHNNE FDSSLTMSTN SVTNTDVGIL QTVQISEGTI HDRSLCCEFV ANPLAGHRRG 360 DV

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MGEIGGFCHS FPQVVTDDFQ PPRLMHDVHV LLVEHRVNFV VNAKELGTSM IAEILKQFSY  60
EVTVVESASC ALSRLYNGTE KFDVLMVNFY LPEISDEEDE NGDEVARSAI EQGVFLYLEK  120
PFPVDMLKYL WQHVYRERRL MNHSSQALDI SMVAETLING ENNIVFTDNQ TATDSNNINH  180
LPRRRGPKFK WTEELHAKFL DAVNQLGAGN CFPKEIWEMM KVPGLTREKV ASHLQRCRDN  240
KWRPLEEHRN RRRSRTMQFS SQPRRPRGQK FGFMPSVEET NNNGNIPPQE KNIAAANDGT  300
SSQNGDHNNE FDSSLTMSTN SVTNTDVGIL QTVQISEGTI HDRSLCCEFV ANPLAGHRRG  360
DV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	6e-23	ARR-B family protein