PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019200235.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 156aa    MW: 16518.3 Da    PI: 5.592
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019200235.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.65.1e-111354243
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    + ++++ r + f  R + ++KK e LS+LC+++v  iif+++
  XP_019200235.1 13 FTSDERSRRTKFKHRTKSLMKKIEQLSILCGIDVGAIIFANH 54
                    6789999********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    
MVKKMGESVK LEFTSDERSR RTKFKHRTKS LMKKIEQLSI LCGIDVGAII FANHADVDAA  60
ADKQLLVWPP APQHLHQLLT LYKQKAAAAA ADVNREEEAA EPSDAGDGDT SSSVSSHSQT  120
QEDTNTQSLL SSSSLQQLNE LEISAGNAGG GGGGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27960.13e-08M-type_MADS family protein