PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019200234.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARR-B

Protein Properties

Length: 430aa MW: 49160.4 Da PI: 5.9245

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019200234.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	69.2	6.7e-22	208	258	3	54
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 + +Wt+eLH++F++av+qL G+ + Pk+i e+mkv+gLt+e+v+SHLQ+ R XP_019200234.1 208 KFKWTEELHAKFIDAVNQL-GAGNCYPKEIWEMMKVPGLTREKVASHLQRCR 258 789**************.999************************988 PP
2	Myb_DNA-binding	36.1	1.5e-11	210	257	3	47
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqky 47 +WT+e++ +++dav+qlG g +k I ++m g+t++ + s++q XP_019200234.1 210 KWTEELHAKFIDAVNQLGAGncYPKEIWEMMKvPGLTREKVASHLQRC 257 7*****************999****999*********975 PP
3	Response_reg	24.4	1.4e-09	48	147	11	107
HHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTT..SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS CS Response_reg 11 rellrqalekegyeevaeaddgeealell..kekdpDlillDiempg..mdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKp 101 ++++++l++ y ev+++++++ al l e+++D+++ +p+ ++ l + i+++ ++i +++ +e a a++ G+ +l+Kp XP_019200234.1 48 TSIIAEILKQFSY-EVTVVESASRALSRLynGEEKFDVLMANFYQPDkkVNVKLLQEAIKRKFLVVQISDEKDENGDEVARSAIEKGVFLYLEKP 141 6899*******.***********666666*******98889888999999988666666666666699*************** PP --HHHH CS Response_reg 102 fdpeel 107 f+ + l XP_019200234.1 142 FPVDML 147 *99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MGEFGGFCHS FPQVVTDDFQ PPRRMHDVHV LIVEHRVNFV ANAKEFGTSI IAEILKQFSY 60 EVTVVESASR ALSRLYNGEE KFDVLMANFY QPDKKVNVKL LQEAIKRKFL VVQISDEKDE 120 NGDEVARSAI EKGVFLYLEK PFPVDMLKYL WQHVYRERRL MNHSSQALNI SMAAETLING 180 QNNIVFTDNQ TATDSNNINH LPRRRGAKFK WTEELHAKFI DAVNQLGAGN CYPKEIWEMM 240 KVPGLTREKV ASHLQRCRDN KWRPVEEHGN RRRSRTMQFS SSQPRRPRHK NFGFMPVVEE 300 TNNKGNMPPQ EQIIAAVNDE ISSQNDGNNN ELGSSVTVST NSVTDTDVRV PPQTVQSSAD 360 IIVHDRRLLD DVQTHPVVTN SLNVDEAVVV NSSPIPWQVA GEPEFDELLD IPEEMLPWIF 420 FGGQQPDFPF

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MGEFGGFCHS FPQVVTDDFQ PPRRMHDVHV LIVEHRVNFV ANAKEFGTSI IAEILKQFSY  60
EVTVVESASR ALSRLYNGEE KFDVLMANFY QPDKKVNVKL LQEAIKRKFL VVQISDEKDE  120
NGDEVARSAI EKGVFLYLEK PFPVDMLKYL WQHVYRERRL MNHSSQALNI SMAAETLING  180
QNNIVFTDNQ TATDSNNINH LPRRRGAKFK WTEELHAKFI DAVNQLGAGN CYPKEIWEMM  240
KVPGLTREKV ASHLQRCRDN KWRPVEEHGN RRRSRTMQFS SSQPRRPRHK NFGFMPVVEE  300
TNNKGNMPPQ EQIIAAVNDE ISSQNDGNNN ELGSSVTVST NSVTDTDVRV PPQTVQSSAD  360
IIVHDRRLLD DVQTHPVVTN SLNVDEAVVV NSSPIPWQVA GEPEFDELLD IPEEMLPWIF  420
FGGQQPDFPF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	5e-24	ARR-B family protein