PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019200204.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 216aa    MW: 23715.8 Da    PI: 8.7188
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019200204.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.12.3e-41431421100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C+++C+++pyf  ++p+kfa vhk+FGasnv+k+l ++pe +r ++++slvyeA++r+rdPvyG++g i++lqq+++ l+ael+
  XP_019200204.1  43 PCAACKLLRRRCTQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPERQRAETANSLVYEANVRLRDPVYGCMGAISALQQKVQALQAELN 137
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++k+e
  XP_019200204.1 138 AVKTE 142
                     *9987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MSRERERYEE IGKKIKREHD DLSQMGRRPP PPPPGGTLNT ITPCAACKLL RRRCTQECPF  60
SPYFSPHEPH KFASVHKVFG ASNVSKMLME VPERQRAETA NSLVYEANVR LRDPVYGCMG  120
AISALQQKVQ ALQAELNAVK TEIMRYKFGE GTNNDINTII PSSHHHHANA SSLLTSGVVS  180
VAAPPPSSSS FYTPPPSSSS AADFGIVSSE NISYFG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.16e-75LBD family protein