PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019200204.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 216aa MW: 23715.8 Da PI: 8.7188 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.1 | 2.3e-41 | 43 | 142 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe +r ++++slvyeA++r+rdPvyG++g i++lqq+++ l+ael+ XP_019200204.1 43 PCAACKLLRRRCTQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPERQRAETANSLVYEANVRLRDPVYGCMGAISALQQKVQALQAELN 137 7********************************************************************************************** PP DUF260 96 llkee 100 ++k+e XP_019200204.1 138 AVKTE 142 *9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence |
MSRERERYEE IGKKIKREHD DLSQMGRRPP PPPPGGTLNT ITPCAACKLL RRRCTQECPF 60 SPYFSPHEPH KFASVHKVFG ASNVSKMLME VPERQRAETA NSLVYEANVR LRDPVYGCMG 120 AISALQQKVQ ALQAELNAVK TEIMRYKFGE GTNNDINTII PSSHHHHANA SSLLTSGVVS 180 VAAPPPSSSS FYTPPPSSSS AADFGIVSSE NISYFG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 6e-75 | LBD family protein |